C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001HW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000033566-ENSDARG00000055070 CGP 7955 13:28824797-28839495
GeneTranscriptPositionBiotype
ENSDARG00000033566 (cyp17a1)
cytochrome P450, family 17, subfamily A, polypeptide 1 		ENSDART00000043156 (cyp17a1-001) 28824797-28834567 protein_coding
ENSDARG00000055070 (C13H10orf32)
C10orf32-ASMT readthrough (NMD candidate) 		ENSDART00000077383 (C13H10orf32-001) 28835915-28839495 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001HW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000148795-ENSG00000166275 CGP 9606 10:102830531-102864961
GeneTranscriptPositionBiotype
ENSG00000148795 (CYP17A1)
cytochrome P450, family 17, subfamily A, polypeptide 1 		ENST00000369887 (CYP17A1-001) 102830531-102837533 protein_coding
ENST00000469683 (CYP17A1-004) 102830948-102831703 retained_intron
ENST00000489268 (CYP17A1-002) 102833475-102837414 processed_transcript
ENSG00000166275 (C10orf32)
chromosome 10 open reading frame 32 		ENST00000339834 (C10orf32-001) 102854223-102864961 protein_coding
ENST00000369883 (C10orf32-002) 102854262-102864213 protein_coding
ENST00000478833 (C10orf32-003) 102854409-102860827 retained_intron
ENSG00000203886 (CYP17A1-AS1)
CYP17A1 antisense RNA 1 		ENST00000369884 (CYP17A1-AS1-001) 102832721-102834516 antisense
ENSG00000213061 (PFN1P11)
profilin 1 pseudogene 11 		ENST00000445829 (PFN1P11-001) 102838011-102845473 processed_pseudogene
ENSG00000236937 (PTGES3P4)
prostaglandin E synthase 3 (cytosolic) pseudogene 4 		ENST00000426243 (PTGES3P4-001) 102845595-102845950 processed_pseudogene
ENSG00000270316 (C10orf32-ASMT)
C10orf32-ASMT readthrough (NMD candidate) 		ENST00000299353 (C10orf32-ASMT-001) 102854272-102901899 nonsense_mediated_decay

Homo sapiens Ensembl (GRCh38)

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CIL_0001HW_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000003555-ENSMUSG00000062376 CGP 10090 19:46667165-46703382
GeneTranscriptPositionBiotype
ENSMUSG00000003555 (Cyp17a1)
cytochrome P450, family 17, subfamily a, polypeptide 1 		ENSMUST00000026012 (Cyp17a1-001) 46667165-46672974 protein_coding
ENSMUST00000131142 (Cyp17a1-003) 46668087-46669513 retained_intron
ENSMUST00000156577 (Cyp17a1-002) 46670726-46671291 retained_intron
ENSMUSG00000062376 (2010012O05Rik)
RIKEN cDNA 2010012O05 gene 		ENSMUST00000074912 (2010012O05Rik-201) 46689906-46703382 protein_coding
ENSMUSG00000097937 (Gm6967)
predicted gene 6967 		ENSMUST00000182599 (Gm6967-001) 46674273-46675279 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HW_0001ENSDARG00000033566ENSDART00000043156ENSDARG00000055070ENSDART00000077383CIL_0001HW_0002ENSG00000148795ENST00000369887ENST00000469683ENST00000489268ENSG00000166275ENST00000339834ENST00000369883ENST00000478833ENSG00000203886ENST00000369884ENSG00000213061ENST00000445829ENSG00000236937ENST00000426243ENSG00000270316ENST00000299353CIL_0001HW_0003ENSMUSG00000003555ENSMUST00000026012ENSMUST00000131142ENSMUST00000156577ENSMUSG00000062376ENSMUST00000074912ENSMUSG00000097937ENSMUST00000182599
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001HW_0001ENSDARG00000033566ENSDART00000043156ENSDARG00000055070ENSDART00000077383CIL_0001HW_0002ENSG00000148795ENST00000369887ENST00000469683ENST00000489268ENSG00000166275ENST00000339834ENST00000369883ENSG00000203886ENST00000369884ENSG00000213061ENST00000445829ENSG00000236937ENST00000426243ENSG00000270316ENST00000299353CIL_0001HW_0003ENSMUSG00000003555ENSMUST00000026012ENSMUST00000131142ENSMUST00000156577ENSMUSG00000062376ENSMUST00000074912ENSMUSG00000097937ENSMUST00000182599
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000033566 ENSDART00000043156 N/A N/A N/A 0.435±0.12 N/A N/A 1.376±0.91 14.895±6.48 0.334±0.00 N/A 0.028±0.00 N/A N/A N/A
ENSDARG00000055070 ENSDART00000077383 N/A N/A N/A 6.588±1.98 N/A N/A 6.274±5.64 14.500±7.51 0.118±0.00 N/A 1.263±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000148795 ENST00000369887 0.041±0.00 0.131±0.00 11.725±0.00 0.111±0.00 0.067±0.00 0.142±0.00 0.104±0.06 3.468±3.18 4.083±4.05 N/A N/A 25.083±38.16 0.026±0.00 22.844±7.29
ENST00000469683 N/A N/A N/A N/A N/A N/A N/A 0.977±0.00 N/A N/A N/A N/A 0.183±0.00 N/A
ENST00000489268 0.114±0.00 0.147±0.00 N/A 0.174±0.02 0.081±0.00 0.140±0.00 0.087±0.00 N/A N/A 0.085±0.01 0.042±0.00 0.016±0.00 0.041±0.00 N/A
ENSG00000166275 ENST00000339834 2.832±0.00 6.543±0.00 2.100±0.00 4.596±0.77 4.169±1.57 2.887±1.30 1.854±1.31 5.911±2.25 5.078±4.40 4.199±2.53 1.602±0.05 3.801±1.82 4.396±0.60 5.234±1.03
ENST00000369883 4.270±0.00 7.601±0.00 N/A 9.284±0.00 7.485±0.00 N/A 4.019±0.00 6.435±0.00 8.237±0.00 7.489±0.00 1.540±0.00 5.917±1.28 6.793±0.12 8.992±0.48
ENST00000478833 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203886 ENST00000369884 0.286±0.00 0.408±0.00 N/A 1.365±0.51 1.257±0.00 0.366±0.00 0.566±0.43 N/A N/A 0.987±0.72 9.151±0.00 0.475±0.00 0.213±0.16 14.254±0.00
ENSG00000213061 ENST00000445829 N/A N/A N/A 0.048±0.00 N/A N/A N/A 0.181±0.00 N/A N/A N/A 0.124±0.00 0.197±0.01 0.106±0.00
ENSG00000236937 ENST00000426243 N/A N/A N/A 0.302±0.27 0.160±0.00 N/A N/A N/A N/A N/A 0.202±0.00 N/A N/A N/A
ENSG00000270316 ENST00000299353 0.983±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.542±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000003555 ENSMUST00000026012 0.071±0.00 0.157±0.03 0.004±0.00 0.023±0.01 0.162±0.08 0.044±0.00 0.093±0.03 0.109±0.05 32.844±27.07 0.032±0.01 0.024±0.00 135.884±53.51 38.580±32.51 82.207±24.42
ENSMUST00000131142 0.086±0.00 N/A 0.036±0.00 N/A 0.129±0.01 N/A 0.073±0.00 0.145±0.00 0.041±0.00 N/A N/A N/A N/A N/A
ENSMUST00000156577 0.257±0.12 N/A N/A 0.074±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000062376 ENSMUST00000074912 5.618±0.94 3.861±0.46 5.578±0.19 3.423±1.66 3.818±0.25 2.132±0.54 2.680±0.24 3.438±0.25 2.922±0.48 2.437±0.69 3.658±0.27 4.416±1.48 2.055±1.15 1.879±1.05
ENSMUSG00000097937 ENSMUST00000182599 0.105±0.02 N/A N/A 0.027±0.01 0.111±0.00 N/A 0.028±0.00 0.056±0.03 0.261±0.17 0.055±0.02 0.066±0.00 0.080±0.04 0.799±0.88 0.066±0.03

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