C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: profilin 1 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000445829 PFN1P11-001 ENSG00000213061 9606 - 10:102838011-102845473 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyOvaryPlacentaTestisENST00000445829
Transcript ID Brain Kidney Ovary Placenta Testis
ENST00000445829 0.048±0.00 0.181±0.00 0.124±0.00 0.197±0.01 0.106±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MQ CIL_0008MQ_0001 VISTA 10:102469546-103070739
CIL_0001HW CIL_0001HW_0002 CGP 10:102830531-102864961

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000108549 Pfn1-002 protein_coding Mus_musculus 0 270
ENSMUST00000018437 Pfn1-001 protein_coding Mus_musculus 0 270
ENSMUST00000177669 Pfn1-003 retained_intron Mus_musculus 1.4013e-45 185
ENSMUST00000178254 Pfn1-004 nonsense_mediated_decay Mus_musculus 3e-34 148

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