C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001I8_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000017155-ENSDARG00000078671 CGP 7955 9:11656091-11810854
GeneTranscriptPositionBiotype
ENSDARG00000017155 (wnt10a)
wingless-type MMTV integration site family, member 10a 		ENSDART00000007308 (wnt10a-001) 11656091-11685923 protein_coding
ENSDARG00000078671 (cdk5r2b)
cyclin-dependent kinase 5, regulatory subunit 2b 		ENSDART00000109037 (cdk5r2b-001) 11808257-11810854 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001I8_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135925-ENSG00000171450 CGP 9606 2:218880363-218962162
GeneTranscriptPositionBiotype
ENSG00000135925 (WNT10A)
wingless-type MMTV integration site family, member 10A 		ENST00000258411 (WNT10A-001) 218880363-218893931 protein_coding
ENST00000458582 (WNT10A-002) 218882161-218893146 protein_coding
ENST00000483911 (WNT10A-003) 218883850-218890099 processed_transcript
ENST00000489887 (WNT10A-004) 218893221-218899581 processed_transcript
ENSG00000171450 (CDK5R2)
cyclin-dependent kinase 5, regulatory subunit 2 (p39) 		ENST00000302625 (CDK5R2-001) 218959655-218962162 protein_coding
ENSG00000200029 (RNU6-642P)
RNA, U6 small nuclear 642, pseudogene 		ENST00000363159 (RNU6-642P-201) 218916184-218916287 snRNA
ENSG00000224928 (KRT8P30)
keratin 8 pseudogene 30 		ENST00000432100 (KRT8P30-001) 218953401-218954050 processed_pseudogene
ENSG00000228135 (LINC01494)
long intergenic non-protein coding RNA 1494 		ENST00000419511 (LINC01494-001) 218900811-218930636 antisense
ENSG00000235024 (AC097468.7)
 ENST00000429343 (AC097468.7-001) 218944629-218961903 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_0001I8_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000026167-ENSMUSG00000090071 CGP 10090 1:74791516-74857732
GeneTranscriptPositionBiotype
ENSMUSG00000026167 (Wnt10a)
wingless-type MMTV integration site family, member 10A 		ENSMUST00000006718 (Wnt10a-001) 74791516-74804179 protein_coding
ENSMUST00000187238 (Wnt10a-002) 74793363-74803495 protein_coding
ENSMUSG00000089964 (Gm16582)
predicted gene 16582 		ENSMUST00000159627 (Gm16582-001) 74850895-74879953 processed_transcript
ENSMUSG00000090071 (Cdk5r2)
cyclin-dependent kinase 5, regulatory subunit 2 (p39) 		ENSMUST00000160379 (Cdk5r2-001) 74854934-74857732 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001I8_0001ENSDARG00000017155ENSDART00000007308ENSDARG00000078671ENSDART00000109037CIL_0001I8_0002ENSG00000135925ENST00000258411ENST00000458582ENST00000483911ENST00000489887ENSG00000171450ENST00000302625ENSG00000200029ENST00000363159ENSG00000224928ENST00000432100ENSG00000228135ENST00000419511ENSG00000235024ENST00000429343CIL_0001I8_0003ENSMUSG00000026167ENSMUST00000006718ENSMUST00000187238ENSMUSG00000089964ENSMUST00000159627ENSMUSG00000090071ENSMUST00000160379
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001I8_0001ENSDARG00000017155ENSDART00000007308ENSDARG00000078671ENSDART00000109037CIL_0001I8_0002ENSG00000135925ENST00000258411ENST00000458582ENSG00000171450ENST00000302625ENSG00000200029ENST00000363159ENSG00000224928ENST00000432100ENSG00000228135ENST00000419511ENSG00000235024ENST00000429343CIL_0001I8_0003ENSMUSG00000026167ENSMUST00000006718ENSMUST00000187238ENSMUSG00000089964ENSMUST00000159627ENSMUSG00000090071ENSMUST00000160379
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000017155 ENSDART00000007308 N/A N/A N/A N/A N/A N/A N/A 0.078±0.00 N/A N/A N/A N/A N/A N/A
ENSDARG00000078671 ENSDART00000109037 N/A N/A N/A 9.451±3.44 N/A N/A 0.082±0.06 0.045±0.00 0.094±0.00 N/A 0.601±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135925 ENST00000258411 0.012±0.00 1.357±0.00 N/A 0.236±0.12 N/A 0.081±0.03 N/A 0.217±0.00 N/A 0.566±0.00 N/A 0.377±0.19 2.278±0.49 0.339±0.05
ENST00000458582 N/A N/A N/A N/A N/A N/A N/A 0.272±0.00 N/A 0.649±0.00 N/A N/A N/A N/A
ENST00000483911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489887 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000171450 ENST00000302625 N/A N/A N/A 26.246±0.00 N/A 0.756±0.00 N/A N/A N/A 0.078±0.00 N/A N/A 0.076±0.00 0.320±0.00
ENSG00000200029 ENST00000363159 N/A N/A N/A 0.642±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000224928 ENST00000432100 N/A N/A N/A 0.387±0.00 N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A 0.185±0.00 0.255±0.22
ENSG00000228135 ENST00000419511 N/A 0.033±0.00 N/A 0.498±0.23 N/A 0.016±0.00 N/A N/A N/A 0.015±0.00 N/A 0.039±0.00 0.094±0.00 0.142±0.05
ENSG00000235024 ENST00000429343 0.031±0.00 0.702±0.00 N/A N/A 0.100±0.00 N/A 0.353±0.32 0.126±0.00 N/A N/A N/A N/A N/A 0.264±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026167 ENSMUST00000006718 0.048±0.03 0.554±0.10 0.444±0.04 0.845±0.94 1.300±0.19 0.037±0.03 0.009±0.00 0.433±0.06 0.010±0.01 0.447±0.42 0.095±0.06 0.901±0.39 0.187±0.22 0.080±0.04
ENSMUST00000187238 N/A N/A N/A N/A N/A 0.035±0.00 N/A N/A N/A 0.031±0.00 N/A N/A N/A 0.140±0.00
ENSMUSG00000089964 ENSMUST00000159627 N/A N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090071 ENSMUST00000160379 0.033±0.01 2.682±0.65 0.034±0.02 26.840±4.42 0.023±0.00 1.054±0.11 0.038±0.02 0.088±0.04 0.014±0.01 0.030±0.01 N/A 0.172±0.10 0.036±0.02 0.031±0.01

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