C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lamin B2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179022 Lmnb2-201 ENSMUSG00000062075 10090 - 10:80901364-80918245 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179022
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179022 5.369±2.02 7.933±1.92 5.673±0.90 17.380±6.85 4.274±1.98 17.290±3.60 2.491±0.26 3.627±0.63 6.169±4.37 3.841±1.00 1.108±0.25 11.885±3.50 6.715±2.41 6.269±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001I9 CIL_0001I9_0002 CGP 10:80899450-80918245
CIL_0001IA CIL_0001IA_0002 CGP 10:80901203-80932204

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005634 IDA nucleus
GO:0005635 IDA nuclear envelope
GO:0005637 IEA nuclear inner membrane
GO:0005638 IDA lamin filament

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252250 KRT6C-001 protein_coding Homo_sapiens 0.000000000000004 88
ENST00000252252 KRT6B-001 protein_coding Homo_sapiens 9e-17 94
ENST00000257860 PRPH-001 protein_coding Homo_sapiens 0.00000000000008 84
ENST00000305620 KRT74-001 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000305748 KRT73-001 protein_coding Homo_sapiens 0.0000000000007 81
ENST00000325327 LMNB2-001 protein_coding Homo_sapiens 0 1567
ENST00000331817 KRT7-001 protein_coding Homo_sapiens 0.0000000000005 81
ENST00000417996 KRT3-001 protein_coding Homo_sapiens 0.00000000000005 84
ENST00000490554 LMNB2-003 retained_intron Homo_sapiens 0 481
ENST00000527409 LMNB2-006 processed_transcript Homo_sapiens 0 610
ENST00000530631 PRPH-003 retained_intron Homo_sapiens 0.00000000000002 84
ENST00000532332 PRPH-004 protein_coding Homo_sapiens 0.00000000000002 84
ENST00000546384 KRT74-002 retained_intron Homo_sapiens 0.000000000000003 86
ENST00000546934 KRT73-002 retained_intron Homo_sapiens 0.0000000000007 81
ENST00000548657 KRT7-011 processed_transcript Homo_sapiens 0.0000000000002 81
ENST00000549127 KRT7-018 processed_transcript Homo_sapiens 0.00000000000009 81
ENST00000549343 KRT74-003 protein_coding Homo_sapiens 0.00000000000002 86
ENST00000552322 KRT7-008 processed_transcript Homo_sapiens 0.0000000000002 81
ENST00000552855 KRT73-003 protein_coding Homo_sapiens 0.0000000000003 81

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