C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001LE_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000041321-ENSDARG00000060632 CGP 7955 6:18242197-18518477
GeneTranscriptPositionBiotype
ENSDARG00000041321 (wdr16)
WD repeat domain 16 		ENSDART00000060549 (wdr16-001) 18242197-18257984 protein_coding
ENSDART00000149109 (wdr16-002) 18253264-18253924 retained_intron
ENSDARG00000060632 (usp43a)
ubiquitin specific peptidase 43a 		ENSDART00000085669 (usp43a-201) 18260755-18518477 protein_coding
ENSDART00000112731 (usp43a-001) 18260489-18518477 protein_coding
ENSDARG00000084224 (AL929281.1)
 ENSDART00000119624 (AL929281.1-201) 18420707-18420769 miRNA
CIL_0001LE_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000166596-ENSG00000154914 CGP 9606 17:9576627-9729691
GeneTranscriptPositionBiotype
ENSG00000154914 (USP43)
ubiquitin specific peptidase 43 		ENST00000285199 (USP43-006) 9645537-9729691 protein_coding
ENST00000570475 (USP43-002) 9645537-9729037 protein_coding
ENST00000570827 (USP43-001) 9644698-9729101 processed_transcript
ENST00000573955 (USP43-004) 9701115-9729684 protein_coding
ENST00000574408 (USP43-003) 9656436-9729684 protein_coding
ENST00000575346 (USP43-005) 9669706-9686863 processed_transcript
ENSG00000166596 (WDR16)
cilia and flagella associated protein 52 		ENST00000352665 (WDR16-001) 9576627-9643459 protein_coding
ENST00000396219 (WDR16-003) 9576627-9643382 protein_coding
ENST00000572333 (WDR16-004) 9576670-9600183 nonsense_mediated_decay
ENST00000574097 (WDR16-006) 9635431-9643390 protein_coding
ENST00000574937 (WDR16-007) 9576644-9612357 nonsense_mediated_decay
ENST00000575247 (WDR16-008) 9576642-9598314 nonsense_mediated_decay
ENST00000576320 (WDR16-010) 9585906-9598569 retained_intron
ENST00000576499 (WDR16-009) 9576682-9594486 protein_coding
ENST00000576630 (WDR16-002) 9576670-9643385 nonsense_mediated_decay
ENST00000576714 (WDR16-005) 9632966-9639145 processed_transcript
ENSG00000241654 (RPL19P18)
ribosomal protein L19 pseudogene 18 		ENST00000466869 (RPL19P18-001) 9589902-9590482 processed_pseudogene
ENSG00000262296 (RP11-55L4.1)
 ENST00000572923 (RP11-55L4.1-001) 9647020-9647660 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LE_0001ENSDARG00000041321ENSDART00000060549ENSDART00000149109ENSDARG00000060632ENSDART00000085669ENSDART00000112731ENSDARG00000084224ENSDART00000119624CIL_0001LE_0002ENSG00000154914ENST00000285199ENST00000570475ENST00000570827ENST00000573955ENST00000574408ENST00000575346ENSG00000166596ENST00000352665ENST00000396219ENST00000572333ENST00000574097ENST00000574937ENST00000575247ENST00000576320ENST00000576499ENST00000576630ENST00000576714ENSG00000241654ENST00000466869ENSG00000262296ENST00000572923
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001LE_0001ENSDARG00000041321ENSDART00000060549ENSDARG00000060632ENSDART00000085669ENSDARG00000084224ENSDART00000119624CIL_0001LE_0002ENSG00000154914ENST00000285199ENST00000570475ENST00000570827ENST00000573955ENST00000574408ENST00000575346ENSG00000166596ENST00000352665ENST00000396219ENST00000574097ENST00000574937ENST00000575247ENST00000576320ENST00000576499ENST00000576714ENSG00000241654ENST00000466869ENSG00000262296ENST00000572923
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000041321 ENSDART00000060549 N/A N/A N/A 0.667±0.07 N/A N/A 0.022±0.00 2.503±0.33 N/A N/A 0.034±0.00 N/A N/A N/A
ENSDART00000149109 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000060632 ENSDART00000085669 N/A N/A N/A 0.501±0.05 N/A N/A 0.097±0.00 N/A 0.012±0.00 N/A 0.106±0.00 N/A N/A N/A
ENSDART00000112731 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000084224 ENSDART00000119624 N/A N/A N/A 400.812±0.00 N/A N/A 36.936±0.00 N/A 6.789±0.00 N/A 29.713±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000154914 ENST00000285199 N/A N/A 0.105±0.00 N/A N/A 0.869±0.00 N/A 0.667±0.00 N/A N/A N/A 1.245±0.00 3.781±0.67 0.599±0.26
ENST00000570475 N/A N/A N/A 0.490±0.00 0.282±0.00 N/A N/A 0.819±0.00 N/A 0.438±0.00 N/A N/A 1.292±0.00 N/A
ENST00000570827 0.017±0.00 N/A N/A N/A N/A 0.155±0.00 N/A N/A N/A N/A N/A N/A N/A 0.155±0.00
ENST00000573955 N/A 0.081±0.00 0.238±0.00 N/A 0.334±0.00 0.233±0.00 N/A 0.323±0.28 0.362±0.30 0.591±0.34 0.062±0.00 0.265±0.00 7.820±6.49 1.050±0.00
ENST00000574408 N/A N/A 0.091±0.00 N/A 0.173±0.00 0.095±0.00 N/A N/A 0.171±0.00 N/A N/A 0.197±0.11 1.774±0.68 N/A
ENST00000575346 N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000166596 ENST00000352665 N/A N/A N/A 0.168±0.04 0.026±0.00 N/A N/A N/A N/A N/A N/A 1.319±0.00 0.055±0.00 4.804±3.19
ENST00000396219 N/A N/A N/A 0.458±0.10 N/A 0.050±0.03 N/A 0.110±0.03 N/A 2.460±0.27 N/A 1.988±1.76 0.045±0.00 8.081±0.00
ENST00000572333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000574097 N/A N/A N/A 0.701±0.00 N/A N/A N/A 0.473±0.38 N/A N/A N/A 0.627±0.00 0.284±0.23 N/A
ENST00000574937 N/A 0.028±0.00 N/A N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000575247 N/A 0.158±0.00 N/A N/A N/A 0.030±0.00 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000576320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.050±0.02 N/A
ENST00000576499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.102±0.00 N/A
ENST00000576630 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000576714 N/A N/A N/A N/A N/A 0.052±0.00 N/A 0.196±0.00 N/A N/A N/A 0.213±0.00 0.250±0.00 N/A
ENSG00000241654 ENST00000466869 N/A N/A N/A N/A N/A 0.030±0.00 N/A N/A N/A N/A N/A 0.044±0.00 N/A 0.166±0.00
ENSG00000262296 ENST00000572923 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.276±0.00 N/A 0.167±0.00 1.610±0.00 N/A

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