C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 29
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180792 Snx29-006 ENSMUSG00000071669 10090 + 16:11322908-11755472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastLiverLungMuscleOvaryPlacentaTestisENSMUST00000180792
Transcript ID Adipose Adrenal Bladder Breast Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180792 1.150±0.00 1.319±0.14 3.997±0.00 2.422±0.58 0.669±0.20 2.823±0.00 0.583±0.26 1.852±0.00 1.382±0.71 0.854±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001LT CIL_0001LT_0002 CGP 16:11313812-11755472
CIL_0007DY CIL_0007DY_0002 CGP 16:11322908-11909445

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process
GO:0035091 IEA phosphatidylinositol binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000114248 snx29-001 protein_coding Danio_rerio 0 237
ENST00000502626 SNX29P2-004 retained_intron Homo_sapiens 0 566
ENST00000507381 SNX29P2-001 processed_transcript Homo_sapiens 0 778
ENST00000509141 SNX29P2-003 processed_transcript Homo_sapiens 0 555
ENST00000548357 SNX29P1-001 unprocessed_pseudogene Homo_sapiens 0 531
ENST00000562510 SNX29-007 protein_coding Homo_sapiens 0 211
ENST00000564111 SNX29-001 retained_intron Homo_sapiens 0 1168
ENST00000564791 SNX29-009 protein_coding Homo_sapiens 0 898
ENST00000566228 SNX29-005 protein_coding Homo_sapiens 0 2484
ENST00000568359 SNX29-003 processed_transcript Homo_sapiens 0 601
ENST00000568949 SNX29-002 retained_intron Homo_sapiens 0 250
ENST00000569801 SNX29-004 nonsense_mediated_decay Homo_sapiens 0 359
ENST00000603801 SNX29P2-005 transcribed_unprocessed_pseudogene Homo_sapiens 0 773

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