C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001MC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000110851-ENSG00000187855 CGP 9606 12:107732866-107776644
GeneTranscriptPositionBiotype
ENSG00000110851 (PRDM4)
PR domain containing 4 		ENST00000228437 (PRDM4-001) 107732866-107761160 protein_coding
ENST00000547188 (PRDM4-004) 107754028-107760928 protein_coding
ENST00000547268 (PRDM4-003) 107754026-107761024 processed_transcript
ENST00000549416 (PRDM4-006) 107741066-107742593 retained_intron
ENST00000550376 (PRDM4-002) 107734191-107761272 nonsense_mediated_decay
ENST00000550659 (PRDM4-005) 107742249-107751775 protein_coding
ENSG00000187855 (ASCL4)
achaete-scute family bHLH transcription factor 4 		ENST00000342331 (ASCL4-001) 107774385-107776644 protein_coding
CIL_0001MC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000035529-ENSMUSG00000085111 CGP 10090 10:85891970-85946206
GeneTranscriptPositionBiotype
ENSMUSG00000001783 (Rtcb)
RNA 2',3'-cyclic phosphate and 5'-OH ligase 		ENSMUST00000001834 (Rtcb-001) 85938637-85957823 protein_coding
ENSMUST00000139413 (Rtcb-002) 85948860-85955779 retained_intron
ENSMUSG00000035529 (Prdm4)
PR domain containing 4 		ENSMUST00000037646 (Prdm4-201) 85891970-85916945 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MC_0001ENSG00000110851ENST00000228437ENST00000547188ENST00000547268ENST00000549416ENST00000550376ENST00000550659ENSG00000187855ENST00000342331CIL_0001MC_0002ENSMUSG00000001783ENSMUST00000001834ENSMUST00000139413ENSMUSG00000035529ENSMUST00000037646
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001MC_0001ENSG00000110851ENST00000228437ENST00000550376ENSG00000187855ENST00000342331CIL_0001MC_0002ENSMUSG00000001783ENSMUST00000001834ENSMUSG00000035529ENSMUST00000037646
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110851 ENST00000228437 4.681±0.00 6.104±0.00 0.428±0.00 2.769±0.24 3.243±0.78 3.732±0.00 2.296±1.68 8.713±0.00 1.098±0.25 1.689±0.92 2.153±0.33 5.440±3.05 3.695±0.87 7.408±1.02
ENST00000547188 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000547268 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550376 N/A N/A N/A N/A N/A N/A N/A N/A 1.515±0.00 0.838±0.00 N/A N/A N/A N/A
ENST00000550659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000187855 ENST00000342331 N/A 0.051±0.00 N/A N/A N/A N/A N/A 0.110±0.00 N/A N/A N/A 0.018±0.00 N/A 0.063±0.05
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001783 ENSMUST00000001834 43.680±9.39 20.566±1.72 49.802±0.84 46.903±17.12 31.567±4.58 29.503±5.57 23.897±1.66 42.683±3.13 37.811±16.93 33.203±9.83 18.682±0.76 50.363±18.78 59.438±15.37 15.233±2.51
ENSMUST00000139413 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000035529 ENSMUST00000037646 3.253±2.08 2.468±1.34 6.809±0.62 5.424±3.74 5.171±1.54 5.028±1.70 2.550±1.13 2.357±1.59 1.925±1.53 3.609±1.71 1.405±0.34 4.441±2.05 5.284±4.37 5.578±3.06

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