C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000037646 Prdm4-201 ENSMUSG00000035529 10090 - 10:85891970-85916945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000037646
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000037646 3.253±2.08 2.468±1.34 6.809±0.62 5.424±3.74 5.171±1.54 5.028±1.70 2.550±1.13 2.357±1.59 1.925±1.53 3.609±1.71 1.405±0.34 4.441±2.05 5.284±4.37 5.578±3.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MB CIL_0001MB_0002 CGP 10:85871831-85916945
CIL_0001MC CIL_0001MC_0002 CGP 10:85891970-85946206

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008168 IEA methyltransferase activity
GO:0032259 IEA methylation
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228437 PRDM4-001 protein_coding Homo_sapiens 0 3142
ENST00000547188 PRDM4-004 protein_coding Homo_sapiens 0 305
ENST00000547268 PRDM4-003 processed_transcript Homo_sapiens 4e-20 102
ENST00000550376 PRDM4-002 nonsense_mediated_decay Homo_sapiens 0 1539
ENST00000550659 PRDM4-005 protein_coding Homo_sapiens 0 1142

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