C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000228437 PRDM4-001 ENSG00000110851 9606 - 12:107732866-107761160 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000228437
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000228437 4.681±0.00 6.104±0.00 0.428±0.00 2.769±0.24 3.243±0.78 3.732±0.00 2.296±1.68 8.713±0.00 1.098±0.25 1.689±0.92 2.153±0.33 5.440±3.05 3.695±0.87 7.408±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MB CIL_0001MB_0001 CGP 12:107685732-107761272
CIL_0001MC CIL_0001MC_0001 CGP 12:107732866-107776644

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007165 TAS signal transduction
GO:0008168 IEA methyltransferase activity
GO:0008270 TAS zinc ion binding
GO:0008283 TAS cell proliferation
GO:0032259 IEA methylation
GO:0045786 TAS negative regulation of cell cycle
GO:0046872 IEA metal ion binding
GO:0048011 TAS neurotrophin TRK receptor signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000037646 Prdm4-201 protein_coding Mus_musculus 0 3142
ENSMUST00000118900 Gm14783-001 processed_pseudogene Mus_musculus 0 782
ENSMUST00000121604 Gm14784-001 processed_pseudogene Mus_musculus 0 763

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