C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA 2',3'-cyclic phosphate and 5'-OH ligase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000001834 Rtcb-001 ENSMUSG00000001783 10090 - 10:85938637-85957823 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000001834
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000001834 43.680±9.39 20.566±1.72 49.802±0.84 46.903±17.12 31.567±4.58 29.503±5.57 23.897±1.66 42.683±3.13 37.811±16.93 33.203±9.83 18.682±0.76 50.363±18.78 59.438±15.37 15.233±2.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001MC CIL_0001MC_0002 CGP 10:85891970-85946206
CIL_0002NK CIL_0002NK_0002 CGP 10:85938637-86011895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0001890 IMP placenta development
GO:0003972 ISS RNA ligase (ATP) activity
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005737 IDA cytoplasm
GO:0006388 ISS tRNA splicing, via endonucleolytic cleavage and ligation
GO:0017166 IEA vinculin binding
GO:0044822 IEA poly(A) RNA binding
GO:0046872 IEA metal ion binding
GO:0072669 ISS tRNA-splicing ligase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216038 RTCB-001 protein_coding Homo_sapiens 0 2132
ENST00000463455 RTCB-003 retained_intron Homo_sapiens 0 363
ENST00000476619 RTCB-006 processed_transcript Homo_sapiens 0 675
ENST00000485373 RTCB-007 processed_transcript Homo_sapiens 0 664
ENST00000487704 RTCB-004 retained_intron Homo_sapiens 0 732
ENST00000498434 RTCB-008 retained_intron Homo_sapiens 0 459

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