C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001MT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000109182-ENSG00000109184 CGP 9606 4:48986247-51916837
GeneTranscriptPositionBiotype
ENSG00000109182 (CWH43)
cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) 		ENST00000226432 (CWH43-001) 48986247-49062079 protein_coding
ENST00000506221 (CWH43-007) 49003609-49017329 retained_intron
ENST00000507372 (CWH43-008) 49028692-49031276 retained_intron
ENST00000513409 (CWH43-002) 48986639-49062076 protein_coding
ENST00000514053 (CWH43-006) 48986313-49062081 nonsense_mediated_decay
ENSG00000109184 (DCUN1D4)
DCN1, defective in cullin neddylation 1, domain containing 4 		ENST00000334635 (DCUN1D4-001) 51843063-51916837 protein_coding
ENST00000381441 (DCUN1D4-002) 51843063-51916837 protein_coding
ENST00000451288 (DCUN1D4-201) 51843579-51916835 protein_coding
ENST00000477560 (DCUN1D4-003) 51843197-51916837 nonsense_mediated_decay
ENST00000502930 (DCUN1D4-008) 51843133-51891823 nonsense_mediated_decay
ENST00000504113 (DCUN1D4-009) 51843131-51887190 processed_transcript
ENST00000504661 (DCUN1D4-013) 51844884-51874367 processed_transcript
ENST00000504923 (DCUN1D4-014) 51877456-51891851 retained_intron
ENST00000505403 (DCUN1D4-012) 51843579-51891851 protein_coding
ENST00000505634 (DCUN1D4-017) 51886568-51913835 nonsense_mediated_decay
ENST00000506673 (DCUN1D4-007) 51843103-51877798 nonsense_mediated_decay
ENST00000507659 (DCUN1D4-016) 51884911-51913642 processed_transcript
ENST00000507741 (DCUN1D4-005) 51843153-51914036 nonsense_mediated_decay
ENST00000508257 (DCUN1D4-020) 51909400-51914102 processed_transcript
ENST00000509068 (DCUN1D4-011) 51843541-51891851 nonsense_mediated_decay
ENST00000509376 (DCUN1D4-004) 51843000-51914294 nonsense_mediated_decay
ENST00000510518 (DCUN1D4-021) 51910753-51913392 retained_intron
ENST00000510587 (DCUN1D4-015) 51884326-51911114 processed_transcript
ENST00000510808 (DCUN1D4-018) 51891807-51913835 protein_coding
ENST00000511675 (DCUN1D4-006) 51843061-51877972 retained_intron
ENST00000512199 (DCUN1D4-019) 51899337-51913723 nonsense_mediated_decay
ENST00000513800 (DCUN1D4-010) 51843153-51875328 processed_transcript
ENSG00000225455 (TPI1P4)
triosephosphate isomerase 1 pseudogene 4 		ENST00000513630 (TPI1P4-001) 49016682-49017154 processed_pseudogene
ENSG00000232471 (RP11-241F15.7)
 ENST00000513357 (RP11-241F15.7-001) 49550032-49557400 unprocessed_pseudogene
ENSG00000237961 (RP11-1281K21.1)
 ENST00000506408 (RP11-1281K21.1-001) 49238032-49245419 processed_pseudogene
ENSG00000248532 (RP11-241F15.5)
 ENST00000504529 (RP11-241F15.5-001) 49523648-49523857 processed_pseudogene
ENSG00000248583 (RP11-241F15.1)
 ENST00000399720 (RP11-241F15.1-001) 49486926-49489554 unprocessed_pseudogene
ENSG00000248946 (RP11-1281K21.7)
 ENST00000510932 (RP11-1281K21.7-001) 49246601-49246915 processed_pseudogene
ENSG00000249079 (RP11-1281K21.3)
 ENST00000508739 (RP11-1281K21.3-001) 49212251-49212624 processed_pseudogene
ENSG00000249337 (SNX18P25)
sorting nexin 18 pseudogene 25 		ENST00000510539 (SNX18P25-001) 49588772-49589529 processed_pseudogene
ENSG00000249828 (RP11-1281K21.2)
 ENST00000512142 (RP11-1281K21.2-001) 49203171-49203726 processed_pseudogene
ENSG00000250016 (SNX18P23)
sorting nexin 18 pseudogene 23 		ENST00000510867 (SNX18P23-001) 49233289-49233965 processed_pseudogene
ENSG00000250473 (DUTP7)
deoxyuridine triphosphatase pseudogene 7 		ENST00000507982 (DUTP7-001) 51865050-51865535 processed_pseudogene
ENSG00000250753 (RP11-241F15.10)
 ENST00000507498 (RP11-241F15.10-001) 49579833-49580189 processed_pseudogene
ENSG00000250769 (RP11-241F15.3)
 ENST00000514077 (RP11-241F15.3-001) 49507764-49508806 processed_pseudogene
ENSG00000251056 (ANKRD20A17P)
ankyrin repeat domain 20 family, member A17, pseudogene 		ENST00000511745 (ANKRD20A17P-001) 49502145-49506022 unprocessed_pseudogene
ENSG00000251539 (SNX18P24)
sorting nexin 18 pseudogene 24 		ENST00000505249 (SNX18P24-001) 49561479-49562149 processed_pseudogene
ENSG00000251630 (RP11-241F15.9)
 ENST00000416712 (RP11-241F15.9-001) 49561285-49561470 processed_pseudogene
ENSG00000268736 (RP11-1281K21.6)
 ENST00000514812 (RP11-1281K21.6-001) 49246021-49246538 processed_pseudogene
ENSG00000280043 (RP11-1281K21.8)
 ENST00000623090 (RP11-1281K21.8-001) 49229573-49231284 TEC

Homo sapiens Ensembl (GRCh38)

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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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CIL_0001MT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029154-ENSMUSG00000051674 CGP 10090 5:73406076-73560794
GeneTranscriptPositionBiotype
ENSMUSG00000029154 (Cwh43)
cell wall biogenesis 43 C-terminal homolog (S. cerevisiae) 		ENSMUST00000031040 (Cwh43-001) 73406076-73453435 protein_coding
ENSMUST00000065543 (Cwh43-002) 73406228-73453276 protein_coding
ENSMUST00000135820 (Cwh43-004) 73430331-73434476 processed_transcript
ENSMUST00000138429 (Cwh43-003) 73418068-73431970 nonsense_mediated_decay
ENSMUSG00000051674 (Dcun1d4)
DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae) 		ENSMUST00000063882 (Dcun1d4-001) 73491026-73560794 protein_coding
ENSMUST00000087181 (Dcun1d4-002) 73481002-73557989 protein_coding
ENSMUST00000113558 (Dcun1d4-003) 73491067-73560790 protein_coding
ENSMUST00000130087 (Dcun1d4-004) 73484444-73557700 nonsense_mediated_decay
ENSMUST00000133137 (Dcun1d4-010) 73491123-73531507 nonsense_mediated_decay
ENSMUST00000134092 (Dcun1d4-011) 73491067-73544048 nonsense_mediated_decay
ENSMUST00000136268 (Dcun1d4-009) 73510868-73534691 protein_coding
ENSMUST00000141553 (Dcun1d4-005) 73491439-73522676 protein_coding
ENSMUST00000145645 (Dcun1d4-006) 73492430-73534675 protein_coding
ENSMUST00000149970 (Dcun1d4-008) 73492847-73520133 processed_transcript
ENSMUST00000156806 (Dcun1d4-007) 73492656-73522719 protein_coding
ENSMUSG00000082039 (Gm15653)
predicted gene 15653 		ENSMUST00000119247 (Gm15653-001) 73476444-73477353 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000109182 ENST00000226432 N/A N/A 0.984±0.00 N/A N/A 5.537±0.00 N/A 3.285±0.00 N/A N/A N/A 1.050±0.05 N/A 0.277±0.00
ENST00000506221 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.440±0.00 N/A N/A N/A 0.217±0.00
ENST00000507372 0.026±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513409 N/A N/A N/A N/A 0.058±0.00 1.014±0.64 N/A N/A 0.235±0.00 N/A N/A 0.457±0.20 N/A 0.012±0.00
ENST00000514053 N/A N/A N/A N/A N/A 0.602±0.00 N/A 0.880±0.00 N/A 0.327±0.25 N/A 0.326±0.00 0.050±0.03 N/A
ENSG00000109184 ENST00000334635 2.345±0.00 1.473±0.00 0.973±0.00 4.283±0.58 2.360±0.79 4.479±0.00 2.247±0.00 1.877±0.00 2.909±0.45 2.520±1.21 0.966±0.00 3.115±1.86 1.002±0.50 4.314±1.48
ENST00000381441 1.442±0.00 0.368±0.00 N/A 1.800±0.02 1.262±0.46 N/A 1.522±0.17 2.663±0.65 2.425±0.00 1.451±0.00 0.756±0.36 2.323±0.12 0.347±0.04 3.885±0.00
ENST00000451288 N/A N/A N/A N/A N/A 1.836±0.00 N/A N/A N/A N/A N/A N/A 0.335±0.00 N/A
ENST00000477560 0.685±0.00 0.606±0.00 0.738±0.00 1.242±0.00 0.850±0.00 0.861±0.00 N/A N/A N/A N/A N/A 1.328±0.33 N/A 2.440±0.00
ENST00000502930 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.075±0.00 N/A N/A
ENST00000504113 N/A N/A 7.410±0.00 19.381±0.00 8.047±0.00 11.598±0.00 7.937±0.00 N/A 33.040±0.00 12.662±0.00 N/A 9.154±0.00 2.165±0.00 17.155±0.00
ENST00000504661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504923 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000505403 N/A N/A N/A N/A N/A N/A N/A N/A 13.569±0.00 N/A N/A 5.215±0.72 3.859±0.00 28.453±0.00
ENST00000505634 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506673 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 4.767±0.00 N/A N/A N/A
ENST00000507659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507741 N/A N/A 1.945±0.00 4.554±0.00 N/A 2.288±0.00 1.562±0.00 4.202±0.00 N/A N/A N/A N/A N/A N/A
ENST00000508257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509068 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510587 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510808 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000512199 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513800 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000225455 ENST00000513630 N/A N/A 0.706±0.00 N/A N/A 0.306±0.23 0.037±0.00 N/A N/A N/A 0.071±0.00 0.130±0.00 N/A N/A
ENSG00000232471 ENST00000513357 N/A 0.048±0.00 0.096±0.00 0.045±0.00 N/A N/A 0.045±0.00 N/A 0.038±0.00 0.042±0.00 N/A N/A 0.018±0.00 0.185±0.00
ENSG00000237961 ENST00000506408 N/A 0.037±0.00 0.192±0.00 0.121±0.00 N/A 0.134±0.00 0.019±0.00 N/A 0.264±0.00 0.212±0.00 N/A 0.012±0.00 0.018±0.00 N/A
ENSG00000248532 ENST00000504529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.360±0.00
ENSG00000248583 ENST00000399720 0.067±0.00 0.066±0.00 0.323±0.00 N/A 0.198±0.12 0.185±0.00 0.249±0.01 0.044±0.00 0.042±0.00 0.914±0.00 N/A 0.224±0.04 0.226±0.00 N/A
ENSG00000248946 ENST00000510932 N/A N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000249079 ENST00000508739 0.025±0.00 N/A N/A N/A N/A N/A 0.046±0.00 N/A N/A N/A N/A 0.815±0.00 0.046±0.00 0.110±0.02
ENSG00000249337 ENST00000510539 N/A N/A N/A 0.024±0.00 N/A N/A 0.354±0.00 0.086±0.03 0.059±0.00 0.067±0.00 N/A 0.052±0.00 N/A N/A
ENSG00000249828 ENST00000512142 N/A N/A N/A N/A 0.037±0.00 N/A 0.031±0.00 N/A N/A N/A N/A N/A N/A 0.071±0.00
ENSG00000250016 ENST00000510867 N/A N/A N/A N/A N/A N/A 0.066±0.00 N/A N/A 0.305±0.00 N/A N/A N/A 0.091±0.00
ENSG00000250473 ENST00000507982 N/A N/A N/A 0.028±0.00 0.455±0.32 N/A 0.547±0.00 N/A N/A N/A 0.289±0.00 0.053±0.00 N/A 0.054±0.00
ENSG00000250753 ENST00000507498 0.082±0.00 0.217±0.00 N/A 0.128±0.00 0.309±0.28 0.628±0.41 0.447±0.00 N/A 0.046±0.00 1.390±0.00 N/A 1.406±0.00 0.536±0.16 0.219±0.05
ENSG00000250769 ENST00000514077 N/A 0.024±0.00 N/A 0.080±0.00 0.044±0.00 0.186±0.00 0.100±0.06 0.208±0.00 0.818±0.00 0.770±0.68 N/A 0.082±0.05 0.132±0.03 0.095±0.03
ENSG00000251056 ENST00000511745 0.116±0.00 0.338±0.00 0.248±0.00 0.103±0.04 0.799±0.00 0.411±0.00 0.397±0.26 0.384±0.00 0.297±0.00 1.939±1.73 N/A 0.089±0.09 0.373±0.14 0.163±0.15
ENSG00000251539 ENST00000505249 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.232±0.00 N/A N/A N/A N/A
ENSG00000251630 ENST00000416712 N/A 0.115±0.00 N/A N/A N/A N/A 0.098±0.00 N/A N/A N/A N/A N/A 0.409±0.00 1.292±0.00
ENSG00000268736 ENST00000514812 N/A N/A N/A 0.072±0.05 0.109±0.00 0.127±0.00 0.273±0.19 N/A 0.314±0.00 0.208±0.00 N/A N/A N/A 0.105±0.04
ENSG00000280043 ENST00000623090 0.290±0.00 0.178±0.00 N/A 0.299±0.00 0.221±0.00 0.053±0.00 0.219±0.10 0.234±0.00 0.062±0.00 0.155±0.13 N/A 0.151±0.04 N/A 0.825±0.29
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029154 ENSMUST00000031040 0.118±0.06 N/A 0.043±0.03 0.033±0.00 0.135±0.06 1.952±0.84 N/A 3.462±0.83 0.017±0.00 0.172±0.13 0.020±0.00 2.980±1.10 0.111±0.04 1.409±0.88
ENSMUST00000065543 0.045±0.00 N/A 0.045±0.00 0.603±0.00 0.094±0.08 3.545±1.12 N/A 2.446±0.71 0.014±0.01 0.146±0.06 N/A 2.420±0.80 0.116±0.15 0.594±0.77
ENSMUST00000135820 N/A N/A 0.081±0.00 N/A N/A N/A N/A N/A N/A N/A 0.082±0.02 N/A N/A N/A
ENSMUST00000138429 0.154±0.00 N/A 0.038±0.00 0.294±0.00 0.267±0.00 N/A N/A N/A N/A N/A 0.036±0.00 N/A 0.111±0.00 0.435±0.00
ENSMUSG00000051674 ENSMUST00000063882 0.756±0.00 1.872±0.00 5.189±0.02 8.380±1.76 1.339±0.00 0.892±0.00 1.450±0.57 1.861±0.65 1.321±0.14 0.820±0.00 2.309±0.28 2.872±1.54 4.892±3.27 N/A
ENSMUST00000087181 N/A 2.086±0.00 N/A 11.686±0.00 N/A N/A N/A N/A 3.156±0.08 1.458±0.00 N/A 3.230±0.00 8.825±2.04 41.580±4.05
ENSMUST00000113558 4.427±0.49 3.423±1.54 0.750±0.04 2.590±0.63 3.163±0.72 2.578±0.53 2.132±0.61 5.835±0.52 4.484±3.52 3.561±0.56 N/A 4.246±2.09 2.847±0.81 7.235±0.47
ENSMUST00000130087 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000133137 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134092 N/A 2.587±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000136268 N/A N/A N/A 80.290±0.00 N/A N/A N/A N/A N/A N/A N/A 32.109±0.00 37.875±1.70 343.973±0.00
ENSMUST00000141553 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145645 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156806 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000082039 ENSMUST00000119247 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A 0.494±0.40 N/A N/A N/A 0.037±0.02 6.600±2.99

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