C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001R6_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000060149-ENSDARG00000060168 CGP 7955 13:44136443-44266431
GeneTranscriptPositionBiotype
ENSDARG00000060149 (ablim1a)
actin binding LIM protein 1a 		ENSDART00000084416 (ablim1a-201) 44138863-44228958 protein_coding
ENSDART00000145705 (ablim1a-001) 44136443-44228999 protein_coding
ENSDARG00000060168 (fam160b1)
family with sequence similarity 160, member B1 		ENSDART00000084474 (fam160b1-001) 44249207-44266431 protein_coding
ENSDART00000127930 (fam160b1-002) 44239410-44266431 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0001R6_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000099204-ENSG00000151553 CGP 9606 10:114431113-114899832
GeneTranscriptPositionBiotype
ENSG00000099204 (ABLIM1)
actin binding LIM protein 1 		ENST00000277895 (ABLIM1-001) 114436038-114658298 protein_coding
ENST00000369252 (ABLIM1-201) 114431113-114684655 protein_coding
ENST00000369253 (ABLIM1-010) 114435441-114526835 protein_coding
ENST00000369256 (ABLIM1-005) 114435954-114685003 protein_coding
ENST00000369266 (ABLIM1-202) 114435461-114526830 protein_coding
ENST00000392952 (ABLIM1-009) 114431113-114526931 protein_coding
ENST00000392955 (ABLIM1-002) 114431113-114684457 nonsense_mediated_decay
ENST00000428430 (ABLIM1-011) 114451645-114526918 protein_coding
ENST00000440467 (ABLIM1-012) 114450079-114487993 protein_coding
ENST00000466400 (ABLIM1-014) 114465465-114468265 retained_intron
ENST00000477638 (ABLIM1-007) 114595002-114610717 processed_transcript
ENST00000481974 (ABLIM1-006) 114547491-114575537 retained_intron
ENST00000485570 (ABLIM1-013) 114439617-114441041 retained_intron
ENST00000533213 (ABLIM1-203) 114431113-114684655 protein_coding
ENSG00000215760 (TAF9BP2)
TAF9B RNA polymerase II, TATA box binding protein (TBP)-associated factor, 31kDa pseudogene 2 		ENST00000400856 (TAF9BP2-001) 114809375-114811170 processed_pseudogene
ENSG00000228169 (PPIAP19)
peptidylprolyl isomerase A (cyclophilin A) pseudogene 19 		ENST00000486414 (PPIAP19-001) 114690143-114690634 processed_pseudogene
ENSG00000228484 (RP11-106M7.1)
 ENST00000436932 (RP11-106M7.1-001) 114764788-114779903 lincRNA
ENSG00000229668 (RP11-317F20.2)
 ENST00000412744 (RP11-317F20.2-001) 114501997-114502347 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001R6_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025085-ENSMUSG00000033478 CGP 10090 19:57032733-57389594
GeneTranscriptPositionBiotype
ENSMUSG00000033478 (Fam160b1)
family with sequence similarity 160, member B1 		ENSMUST00000036407 (Fam160b1-201) 57361009-57389594 protein_coding
ENSMUSG00000097785 (B230217O12Rik)
RIKEN cDNA B230217O12 gene 		ENSMUST00000181921 (B230217O12Rik-201) 57323385-57360775 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R6_0001ENSDARG00000060149ENSDART00000084416ENSDART00000145705ENSDARG00000060168ENSDART00000084474ENSDART00000127930CIL_0001R6_0002ENSG00000099204ENST00000277895ENST00000369252ENST00000369253ENST00000369256ENST00000369266ENST00000392952ENST00000392955ENST00000428430ENST00000440467ENST00000466400ENST00000477638ENST00000481974ENST00000485570ENST00000533213ENSG00000215760ENST00000400856ENSG00000228169ENST00000486414ENSG00000228484ENST00000436932ENSG00000229668ENST00000412744CIL_0001R6_0003ENSMUSG00000033478ENSMUST00000036407ENSMUSG00000097785ENSMUST00000181921
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001R6_0001ENSDARG00000060149ENSDART00000084416ENSDART00000145705ENSDARG00000060168ENSDART00000084474ENSDART00000127930CIL_0001R6_0002ENSG00000099204ENST00000277895ENST00000369253ENST00000369256ENST00000392952ENST00000392955ENSG00000215760ENST00000400856ENSG00000228169ENST00000486414ENSG00000228484ENST00000436932ENSG00000229668ENST00000412744CIL_0001R6_0003ENSMUSG00000033478ENSMUST00000036407ENSMUSG00000097785ENSMUST00000181921
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000060149 ENSDART00000084416 N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A 0.011±0.00 N/A 0.465±0.00 N/A N/A N/A
ENSDART00000145705 N/A N/A N/A 13.232±1.45 N/A N/A 0.292±0.15 2.897±2.53 0.054±0.00 N/A N/A N/A N/A N/A
ENSDARG00000060168 ENSDART00000084474 N/A N/A N/A 0.240±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000127930 N/A N/A N/A 4.790±2.22 N/A N/A 2.359±0.50 4.472±0.00 1.386±0.00 N/A 2.285±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000099204 ENST00000277895 N/A N/A 6.632±0.00 5.446±0.00 N/A N/A N/A N/A 5.045±0.00 N/A N/A N/A N/A N/A
ENST00000369252 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000369253 N/A N/A 6.669±0.00 N/A N/A 8.970±0.00 N/A N/A 7.004±0.00 5.997±0.00 2.388±0.00 21.133±0.00 N/A N/A
ENST00000369256 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.055±0.00 N/A N/A N/A
ENST00000369266 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392952 36.703±0.00 N/A 1.661±0.00 N/A 7.567±3.75 N/A 41.158±0.00 N/A 4.477±0.00 N/A 5.001±0.00 20.793±10.48 N/A N/A
ENST00000392955 42.889±0.00 3.010±0.00 N/A 7.180±5.49 11.824±0.00 19.349±0.00 N/A 4.331±0.00 1.268±0.00 3.477±0.66 5.219±0.00 3.179±0.00 3.972±1.34 7.833±1.20
ENST00000428430 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000440467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466400 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000481974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485570 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000533213 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000215760 ENST00000400856 N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A N/A N/A N/A N/A N/A 0.064±0.00
ENSG00000228169 ENST00000486414 0.032±0.00 0.199±0.00 N/A 0.036±0.00 0.454±0.42 2.775±0.00 1.100±1.04 0.168±0.00 0.735±0.00 N/A 0.147±0.00 0.183±0.05 N/A N/A
ENSG00000228484 ENST00000436932 0.103±0.00 0.217±0.00 0.142±0.00 1.021±0.81 0.110±0.05 0.113±0.00 0.051±0.00 0.118±0.00 0.045±0.00 0.032±0.00 0.051±0.00 0.084±0.06 0.032±0.00 0.132±0.08
ENSG00000229668 ENST00000412744 0.283±0.00 0.624±0.00 1.388±0.00 N/A 0.732±0.70 0.377±0.00 0.548±0.35 N/A 2.952±0.00 1.058±0.00 N/A 0.531±0.55 N/A 0.090±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000033478 ENSMUST00000036407 4.961±1.31 7.434±1.15 5.716±1.71 3.033±0.62 5.222±1.09 5.461±0.51 2.956±0.72 3.396±0.87 5.340±1.57 7.584±1.75 2.942±0.57 6.951±2.93 6.038±2.18 6.834±1.95
ENSMUSG00000097785 ENSMUST00000181921 0.271±0.08 0.592±0.13 0.538±0.00 1.622±1.55 0.120±0.04 0.088±0.07 0.163±0.07 0.095±0.04 0.231±0.06 0.244±0.02 0.451±0.14 0.582±0.38 0.145±0.07 0.697±0.30

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