C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin binding LIM protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000392955 ABLIM1-002 ENSG00000099204 9606 - 10:114431113-114684457 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000392955
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000392955 42.889±0.00 3.010±0.00 7.180±5.49 11.824±0.00 19.349±0.00 4.331±0.00 1.268±0.00 3.477±0.66 5.219±0.00 3.179±0.00 3.972±1.34 7.833±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002OJ CIL_0002OJ_0001 CGP 10:114294824-114685003
CIL_0001R6 CIL_0001R6_0002 CGP 10:114431113-114899832

Gene Ontology

GO IDEvidence TypeGO Description
GO:0008270 IEA zinc ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111559 Ablim1-008 protein_coding Mus_musculus 0 2739
ENSMUST00000111555 Ablim1-018 protein_coding Mus_musculus 0 2706
ENSMUST00000111546 Ablim1-016 protein_coding Mus_musculus 0 2675
ENSMUST00000099294 Ablim1-001 protein_coding Mus_musculus 0 1775
ENSMUST00000111558 Ablim1-020 protein_coding Mus_musculus 0 1718
ENSMUST00000111544 Ablim1-002 protein_coding Mus_musculus 0 1515
ENSMUST00000156316 Ablim1-003 retained_intron Mus_musculus 0 1511
ENSMUST00000104902 Ablim1-201 protein_coding Mus_musculus 0 1219
ENSMUST00000079360 Ablim1-004 protein_coding Mus_musculus 0 1219
ENSMUST00000111526 Ablim1-019 protein_coding Mus_musculus 0 1037
ENSMUST00000111528 Ablim1-015 protein_coding Mus_musculus 0 1037
ENSMUST00000111529 Ablim1-013 protein_coding Mus_musculus 0 1037
ENSMUST00000111550 Ablim1-017 protein_coding Mus_musculus 0 1002
ENSMUST00000133782 Ablim1-007 retained_intron Mus_musculus 0 957
ENSMUST00000133369 Ablim1-009 protein_coding Mus_musculus 0 815
ENSMUST00000111524 Ablim1-006 protein_coding Mus_musculus 0 815
ENSMUST00000137389 Ablim1-011 processed_transcript Mus_musculus 0 676

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