C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A1 pseudogene 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000411857 HNRNPA1P54-001 ENSG00000236539 9606 - 1:179447602-179457315 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000411857
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000411857 0.194±0.00 0.442±0.00 0.111±0.11 0.101±0.09 0.143±0.00 0.069±0.06 0.070±0.00 0.090±0.06 0.048±0.00 0.052±0.04 0.044±0.04 0.399±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001WC CIL_0001WC_0002 CGP 1:179365720-179575952

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036004 Hnrnpa1-201 protein_coding Mus_musculus 0 1679
ENSMUST00000118970 Gm16216-001 processed_pseudogene Mus_musculus 0 1242
ENSMUST00000032776 Mef2a-005 protein_coding Mus_musculus 0 990
ENSMUST00000076325 Mef2a-003 protein_coding Mus_musculus 0 990
ENSMUST00000122346 Gm11860-001 processed_pseudogene Mus_musculus 0 841
ENSMUST00000050143 Gm7729-001 unprocessed_pseudogene Mus_musculus 0 824
ENSMUST00000168019 Gm10052-001 processed_pseudogene Mus_musculus 0 824
ENSMUST00000087351 Hnrnpa1-202 protein_coding Mus_musculus 0 824
ENSMUST00000117081 Gm5643-001 processed_pseudogene Mus_musculus 0 813
ENSMUST00000022493 Gm5803-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000181363 Gm8652-001 processed_pseudogene Mus_musculus 0 758
ENSMUST00000129154 Hnrnpa1l2-ps-001 processed_pseudogene Mus_musculus 0 726
ENSMUST00000040649 AC165425.1-201 pseudogene Mus_musculus 0 656
ENSMUST00000184038 Gm5269-001 translated_processed_pseudogene Mus_musculus 0 558
ENSMUST00000178732 RP24-383H12.1-001 processed_pseudogene Mus_musculus 0 427
ENSMUST00000119387 Gm12458-001 processed_pseudogene Mus_musculus 0 424
ENSMUST00000122005 Gm12382-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000119097 Gm13418-001 processed_pseudogene Mus_musculus 0 246
ENSMUST00000183590 Gm5269-002 protein_coding Mus_musculus 1e-21 111
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.0000000000008 82

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