C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001XQ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124198-ENSG00000124207 CGP 9606 20:48921890-49096960
GeneTranscriptPositionBiotype
ENSG00000124198 (ARFGEF2)
ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 		ENST00000371917 (ARFGEF2-001) 48921890-49036693 protein_coding
ENST00000493140 (ARFGEF2-002) 48998100-48998446 processed_transcript
ENSG00000124207 (CSE1L)
CSE1 chromosome segregation 1-like (yeast) 		ENST00000262982 (CSE1L-001) 49046312-49096952 protein_coding
ENST00000396192 (CSE1L-201) 49046246-49096960 protein_coding
ENST00000469700 (CSE1L-002) 49090763-49096952 processed_transcript
ENSG00000227431 (CSE1L-AS1)
CSE1L antisense RNA 1 		ENST00000417781 (CSE1L-AS1-001) 49040463-49046044 antisense
ENST00000428190 (CSE1L-AS1-002) 49040463-49046044 antisense
ENSG00000230758 (SNAP23P)
synaptosomal-associated protein, 23kDa pseudogene 		ENST00000433229 (SNAP23P-001) 49038357-49038602 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_0001XQ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074582-ENSMUSG00000002718 CGP 10090 2:166805588-166946389
GeneTranscriptPositionBiotype
ENSMUSG00000002718 (Cse1l)
chromosome segregation 1-like (S. cerevisiae) 		ENSMUST00000002790 (Cse1l-001) 166906059-166946389 protein_coding
ENSMUST00000129061 (Cse1l-005) 166940833-166941819 retained_intron
ENSMUST00000132402 (Cse1l-004) 166927565-166932403 retained_intron
ENSMUST00000135139 (Cse1l-003) 166927724-166935087 retained_intron
ENSMUST00000145819 (Cse1l-002) 166934755-166944853 retained_intron
ENSMUST00000163437 (Cse1l-008) 166927530-166945808 protein_coding
ENSMUST00000163917 (Cse1l-009) 166937093-166941250 retained_intron
ENSMUST00000164974 (Cse1l-012) 166934782-166941454 nonsense_mediated_decay
ENSMUST00000166871 (Cse1l-011) 166927768-166937421 processed_transcript
ENSMUST00000168599 (Cse1l-007) 166915180-166945793 protein_coding
ENSMUST00000169290 (Cse1l-006) 166906111-166946101 nonsense_mediated_decay
ENSMUST00000171410 (Cse1l-010) 166906040-166944550 processed_transcript
ENSMUSG00000074582 (Arfgef2)
ADP-ribosylation factor guanine nucleotide-exchange factor 2 (brefeldin A-inhibited) 		ENSMUST00000099078 (Arfgef2-001) 166805588-166898052 protein_coding
ENSMUST00000144847 (Arfgef2-002) 166827657-166848971 protein_coding
ENSMUSG00000090397 (Gm17096)
predicted gene 17096 		ENSMUST00000172037 (Gm17096-001) 166943539-166944308 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XQ_0001ENSG00000124198ENST00000371917ENST00000493140ENSG00000124207ENST00000262982ENST00000396192ENST00000469700ENSG00000227431ENST00000417781ENST00000428190ENSG00000230758ENST00000433229CIL_0001XQ_0002ENSMUSG00000002718ENSMUST00000002790ENSMUST00000129061ENSMUST00000132402ENSMUST00000135139ENSMUST00000145819ENSMUST00000163437ENSMUST00000163917ENSMUST00000164974ENSMUST00000166871ENSMUST00000168599ENSMUST00000169290ENSMUST00000171410ENSMUSG00000074582ENSMUST00000099078ENSMUST00000144847ENSMUSG00000090397ENSMUST00000172037
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001XQ_0001ENSG00000124198ENST00000371917ENSG00000124207ENST00000262982ENST00000396192ENST00000469700ENSG00000227431ENST00000417781ENST00000428190ENSG00000230758ENST00000433229CIL_0001XQ_0002ENSMUSG00000002718ENSMUST00000002790ENSMUST00000132402ENSMUST00000168599ENSMUST00000169290ENSMUST00000171410ENSMUSG00000074582ENSMUST00000099078ENSMUSG00000090397ENSMUST00000172037
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000124198 ENST00000371917 2.807±0.00 1.076±0.00 3.181±0.00 5.154±3.32 5.856±0.73 4.977±1.15 5.657±2.55 2.606±0.57 3.231±1.23 1.875±0.00 2.605±1.08 5.804±1.54 2.384±0.88 8.393±0.09
ENST00000493140 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000124207 ENST00000262982 10.985±0.00 10.390±0.00 5.465±0.00 13.786±2.15 8.228±0.00 9.777±4.08 6.947±4.27 9.361±3.71 3.996±0.00 6.960±2.17 10.292±6.20 16.671±1.87 12.495±1.44 47.756±7.15
ENST00000396192 N/A N/A N/A N/A N/A N/A 0.813±0.00 N/A 2.001±0.00 N/A N/A 18.960±0.00 12.738±0.00 49.431±0.00
ENST00000469700 N/A 4.456±0.00 N/A N/A N/A N/A N/A 4.411±0.00 2.716±0.00 N/A N/A 22.432±15.88 12.736±0.00 N/A
ENSG00000227431 ENST00000417781 N/A N/A N/A N/A 0.206±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 3.061±0.65
ENST00000428190 0.140±0.00 0.444±0.00 N/A N/A 0.079±0.00 N/A N/A N/A 0.067±0.00 N/A N/A N/A N/A 1.169±0.00
ENSG00000230758 ENST00000433229 N/A N/A N/A 0.283±0.00 N/A N/A N/A 0.228±0.00 N/A N/A N/A 0.399±0.00 N/A 4.094±3.45
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002718 ENSMUST00000002790 11.369±3.23 22.150±3.63 12.726±2.00 27.021±1.55 9.201±1.46 5.403±1.99 9.302±0.67 9.364±1.83 15.332±9.90 8.357±1.40 17.150±1.09 10.227±6.61 25.464±17.16 11.122±4.63
ENSMUST00000129061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000132402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.932±0.00
ENSMUST00000135139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145819 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163437 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000163917 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164974 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000166871 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168599 N/A N/A N/A 2.360±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000169290 2.665±0.54 N/A N/A 2.320±0.00 3.218±1.16 1.556±0.41 1.314±0.00 1.994±0.06 2.028±0.00 3.083±0.17 N/A 4.925±2.24 2.413±0.00 2.382±0.63
ENSMUST00000171410 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 20.777±0.00 13.050±0.00 9.920±0.00
ENSMUSG00000074582 ENSMUST00000099078 6.485±2.50 12.905±3.40 4.832±0.09 2.714±0.45 7.634±1.80 10.605±2.32 4.903±1.54 9.258±1.39 6.554±2.52 8.932±3.04 2.053±1.22 4.916±1.94 7.397±4.19 10.302±0.49
ENSMUST00000144847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000090397 ENSMUST00000172037 0.647±0.45 1.031±0.32 0.786±0.16 1.716±0.57 0.987±0.26 0.493±0.25 0.185±0.08 0.287±0.08 0.538±0.38 0.619±0.04 0.170±0.10 1.346±0.45 0.640±0.29 0.617±0.25

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