C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001YN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000196468-ENSG00000085224 CGP 9606 X:77447405-77786269
GeneTranscriptPositionBiotype
ENSG00000085224 (ATRX)
alpha thalassemia/mental retardation syndrome X-linked 		ENST00000373344 (ATRX-001) 77504878-77786269 protein_coding
ENST00000395603 (ATRX-002) 77505713-77786216 protein_coding
ENST00000400866 (ATRX-007) 77616245-77633321 protein_coding
ENST00000460639 (ATRX-006) 77634422-77652150 retained_intron
ENST00000479487 (ATRX-008) 77599735-77600755 retained_intron
ENST00000480283 (ATRX-003) 77505713-77786216 nonsense_mediated_decay
ENST00000493470 (ATRX-005) 77673954-77682141 protein_coding
ENST00000622960 (ATRX-012) 77696688-77786233 protein_coding
ENST00000623242 (ATRX-016) 77633353-77652276 nonsense_mediated_decay
ENST00000623316 (ATRX-018) 77574257-77600540 nonsense_mediated_decay
ENST00000623321 (ATRX-009) 77683507-77786225 protein_coding
ENST00000623706 (ATRX-011) 77506905-77596875 retained_intron
ENST00000624032 (ATRX-004) 77682305-77786208 protein_coding
ENST00000624166 (ATRX-010) 77654158-77786220 protein_coding
ENST00000624193 (ATRX-014) 77697603-77786204 processed_transcript
ENST00000624403 (ATRX-017) 77620428-77633865 retained_intron
ENST00000624668 (ATRX-013) 77684998-77786208 protein_coding
ENST00000624766 (ATRX-019) 77508481-77522468 retained_intron
ENST00000625063 (ATRX-015) 77684478-77698580 protein_coding
ENSG00000196468 (FGF16)
fibroblast growth factor 16 		ENST00000439435 (FGF16-001) 77447405-77457278 protein_coding
CIL_0001YN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000031230-ENSMUSG00000031229 CGP 10090 X:105764279-105929397
GeneTranscriptPositionBiotype
ENSMUSG00000031230 (Fgf16)
fibroblast growth factor 16 		ENSMUST00000033581 (Fgf16-001) 105764279-105774939 protein_coding
ENSMUSG00000079965 (Gm14853)
predicted gene 14853 		ENSMUST00000116081 (Gm14853-001) 105844465-105845013 processed_pseudogene
ENSMUSG00000084575 (Gm23656)
predicted gene, 23656 		ENSMUST00000122626 (Gm23656-201) 105873824-105873935 snRNA
ENSMUSG00000084678 (Gm26020)
predicted gene, 26020 		ENSMUST00000122729 (Gm26020-201) 105819883-105820065 snRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YN_0001ENSG00000085224ENST00000373344ENST00000395603ENST00000400866ENST00000460639ENST00000479487ENST00000480283ENST00000493470ENST00000622960ENST00000623242ENST00000623316ENST00000623321ENST00000623706ENST00000624032ENST00000624166ENST00000624193ENST00000624403ENST00000624668ENST00000624766ENST00000625063ENSG00000196468ENST00000439435CIL_0001YN_0002ENSMUSG00000031230ENSMUST00000033581ENSMUSG00000079965ENSMUST00000116081ENSMUSG00000084575ENSMUST00000122626ENSMUSG00000084678ENSMUST00000122729
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001YN_0001ENSG00000085224ENST00000373344ENST00000395603ENST00000480283ENST00000623242ENST00000624032ENST00000624166ENSG00000196468ENST00000439435CIL_0001YN_0002ENSMUSG00000031230ENSMUST00000033581ENSMUSG00000079965ENSMUST00000116081ENSMUSG00000084575ENSMUST00000122626ENSMUSG00000084678ENSMUST00000122729
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000085224 ENST00000373344 1.546±0.00 N/A N/A 1.864±0.23 1.088±0.00 0.778±0.00 1.050±0.00 0.564±0.00 N/A N/A N/A 2.037±0.60 1.534±1.35 1.981±0.00
ENST00000395603 4.793±0.00 4.178±0.00 2.072±0.00 4.165±1.88 3.416±0.00 2.532±0.94 3.267±0.00 2.803±1.75 0.976±0.00 6.069±0.00 3.953±0.00 2.010±0.54 0.767±0.00 3.883±0.00
ENST00000400866 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460639 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479487 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000480283 N/A N/A 0.978±0.00 N/A 5.066±0.00 N/A N/A N/A 6.663±0.00 N/A 0.747±0.00 3.334±0.00 2.336±1.98 1.877±1.13
ENST00000493470 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000622960 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623242 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.570±0.00 34.209±0.00 26.433±0.00
ENST00000623316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623321 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000623706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624032 N/A N/A 2.922±0.00 N/A 7.352±0.00 5.840±0.00 N/A 1.947±0.00 N/A 7.209±0.00 N/A 3.897±0.00 N/A N/A
ENST00000624166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.593±0.00 3.156±0.00 N/A
ENST00000624193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624403 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624668 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000624766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000625063 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000196468 ENST00000439435 0.018±0.00 0.009±0.00 N/A 0.029±0.00 0.226±0.00 0.033±0.00 0.043±0.00 N/A N/A 0.061±0.00 0.279±0.00 0.029±0.00 N/A 0.156±0.08
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000031230 ENSMUST00000033581 0.331±0.20 0.163±0.05 0.223±0.01 0.065±0.07 0.282±0.15 0.085±0.06 5.010±0.21 0.096±0.02 0.013±0.01 0.123±0.01 0.068±0.04 0.537±0.26 0.055±0.04 N/A
ENSMUSG00000079965 ENSMUST00000116081 0.234±0.08 0.149±0.00 0.191±0.01 0.491±0.20 0.247±0.15 0.135±0.01 0.071±0.00 0.171±0.06 0.131±0.05 0.321±0.09 0.147±0.00 0.484±0.23 0.148±0.02 0.077±0.00
ENSMUSG00000084575 ENSMUST00000122626 N/A 2829.780±0.00 N/A N/A N/A N/A N/A N/A 30.456±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000084678 ENSMUST00000122729 N/A N/A N/A 2.680±0.00 N/A N/A N/A 13.487±4.75 3.483±2.23 N/A N/A 1.535±0.06 0.963±0.06 N/A

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