C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha thalassemia/mental retardation syndrome X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000624032 ATRX-004 ENSG00000085224 9606 - X:77682305-77786208 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonKidneyLungOvaryENST00000624032
Transcript ID Bladder Breast Colon Kidney Lung Ovary
ENST00000624032 2.922±0.00 7.352±0.00 5.840±0.00 1.947±0.00 7.209±0.00 3.897±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YN CIL_0001YN_0001 CGP X:77447405-77786269
CIL_0001YT CIL_0001YT_0001 CGP X:77504878-77895593

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113573 Atrx-001 protein_coding Mus_musculus 0 1855
ENSMUST00000150914 Atrx-003 protein_coding Mus_musculus 0 1543
ENSMUST00000128968 Atrx-014 protein_coding Mus_musculus 0 1203
ENSMUST00000134507 Atrx-002 protein_coding Mus_musculus 0 955
ENSMUST00000154866 Atrx-018 protein_coding Mus_musculus 0 878
ENSMUST00000134381 Atrx-015 protein_coding Mus_musculus 0 693
ENSMUST00000101305 Atrx-004 protein_coding Mus_musculus 0 593
ENSMUST00000137453 Atrx-013 protein_coding Mus_musculus 0 375
ENSMUST00000130980 Atrx-016 protein_coding Mus_musculus 0 331
ENSMUST00000133543 Atrx-019 retained_intron Mus_musculus 0 263

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