C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha thalassemia/mental retardation syndrome X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480283 ATRX-003 ENSG00000085224 9606 - X:77505713-77786216 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastLiverMuscleOvaryPlacentaTestisENST00000480283
Transcript ID Bladder Breast Liver Muscle Ovary Placenta Testis
ENST00000480283 0.978±0.00 5.066±0.00 6.663±0.00 0.747±0.00 3.334±0.00 2.336±1.98 1.877±1.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YN CIL_0001YN_0001 CGP X:77447405-77786269
CIL_0001YT CIL_0001YT_0001 CGP X:77504878-77895593

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113573 Atrx-001 protein_coding Mus_musculus 0 8386
ENSMUST00000128968 Atrx-014 protein_coding Mus_musculus 0 1770
ENSMUST00000123174 Atrx-005 retained_intron Mus_musculus 0 1177
ENSMUST00000141609 Atrx-009 processed_transcript Mus_musculus 0 989
ENSMUST00000150914 Atrx-003 protein_coding Mus_musculus 0 952
ENSMUST00000134507 Atrx-002 protein_coding Mus_musculus 0 952
ENSMUST00000142235 Atrx-007 retained_intron Mus_musculus 0 874
ENSMUST00000127221 Atrx-010 processed_transcript Mus_musculus 0 811
ENSMUST00000134381 Atrx-015 protein_coding Mus_musculus 0 689
ENSMUST00000101305 Atrx-004 protein_coding Mus_musculus 0 593
ENSMUST00000146193 Atrx-006 retained_intron Mus_musculus 0 573
ENSMUST00000155445 Atrx-008 retained_intron Mus_musculus 0 472
ENSMUST00000154866 Atrx-018 protein_coding Mus_musculus 0 455
ENSMUST00000137453 Atrx-013 protein_coding Mus_musculus 0 375
ENSMUST00000138765 Atrx-011 retained_intron Mus_musculus 0 355
ENSMUST00000130980 Atrx-016 protein_coding Mus_musculus 0 331
ENSMUST00000133543 Atrx-019 retained_intron Mus_musculus 0 259
ENSMUST00000143361 Atrx-012 retained_intron Mus_musculus 0 230

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