C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: alpha thalassemia/mental retardation syndrome X-linked
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000373344 ATRX-001 ENSG00000085224 9606 - X:77504878-77786269 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyOvaryPlacentaTestisENST00000373344
Transcript ID Adipose Brain Breast Colon Heart Kidney Ovary Placenta Testis
ENST00000373344 1.546±0.00 1.864±0.23 1.088±0.00 0.778±0.00 1.050±0.00 0.564±0.00 2.037±0.60 1.534±1.35 1.981±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001YN CIL_0001YN_0001 CGP X:77447405-77786269
CIL_0001YT CIL_0001YT_0001 CGP X:77504878-77895593

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000792 IEA heterochromatin
GO:0003677 IEA DNA binding
GO:0003678 TAS DNA helicase activity
GO:0003682 IEA chromatin binding
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005720 TAS nuclear heterochromatin
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006200 IDA ATP catabolic process
GO:0006281 IEA DNA repair
GO:0006306 TAS DNA methylation
GO:0006310 TAS DNA recombination
GO:0006334 IDA nucleosome assembly
GO:0006336 IMP DNA replication-independent nucleosome assembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0010571 ISS positive regulation of nuclear cell cycle DNA replication
GO:0015616 IDA DNA translocase activity
GO:0030330 ISS DNA damage response, signal transduction by p53 class mediator
GO:0030900 IEA forebrain development
GO:0031297 ISS replication fork processing
GO:0031933 ISS telomeric heterochromatin
GO:0032206 ISS positive regulation of telomere maintenance
GO:0032508 TAS DNA duplex unwinding
GO:0035064 IDA methylated histone binding
GO:0042393 IDA histone binding
GO:0045944 IMP positive regulation of transcription from RNA polymerase II promoter
GO:0060009 IEA Sertoli cell development
GO:0070087 IPI chromo shadow domain binding
GO:0070603 IDA SWI/SNF superfamily-type complex
GO:0072520 IEA seminiferous tubule development
GO:0072711 ISS cellular response to hydroxyurea
GO:1901581 ISS negative regulation of telomeric RNA transcription from RNA pol II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113573 Atrx-001 protein_coding Mus_musculus 0 9106
ENSMUST00000128968 Atrx-014 protein_coding Mus_musculus 0 1768
ENSMUST00000150914 Atrx-003 protein_coding Mus_musculus 0 1543
ENSMUST00000123174 Atrx-005 retained_intron Mus_musculus 0 1177
ENSMUST00000141609 Atrx-009 processed_transcript Mus_musculus 0 989
ENSMUST00000134507 Atrx-002 protein_coding Mus_musculus 0 955
ENSMUST00000154866 Atrx-018 protein_coding Mus_musculus 0 878
ENSMUST00000142235 Atrx-007 retained_intron Mus_musculus 0 874
ENSMUST00000127221 Atrx-010 processed_transcript Mus_musculus 0 811
ENSMUST00000134381 Atrx-015 protein_coding Mus_musculus 0 693
ENSMUST00000101305 Atrx-004 protein_coding Mus_musculus 0 593
ENSMUST00000146193 Atrx-006 retained_intron Mus_musculus 0 573
ENSMUST00000155445 Atrx-008 retained_intron Mus_musculus 0 472
ENSMUST00000137453 Atrx-013 protein_coding Mus_musculus 0 375
ENSMUST00000138765 Atrx-011 retained_intron Mus_musculus 0 355
ENSMUST00000130980 Atrx-016 protein_coding Mus_musculus 0 331
ENSMUST00000133543 Atrx-019 retained_intron Mus_musculus 0 263
ENSMUST00000143361 Atrx-012 retained_intron Mus_musculus 0 230

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