C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00020B_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000020442-ENSDARG00000016656 CGP 7955 13:33869888-33883360
GeneTranscriptPositionBiotype
ENSDARG00000016656 (mgme1)
mitochondrial genome maintenance exonuclease 1 		ENSDART00000023379 (mgme1-001) 33879879-33883360 protein_coding
ENSDARG00000020442 (snx5)
sorting nexin 5 		ENSDART00000020350 (snx5-001) 33869888-33879406 protein_coding
ENSDARG00000077481 (si:dkey-76k16.6)
si:dkey-76k16.6 		ENSDART00000131821 (si:dkey-76k16.6-001) 33883346-33886998 protein_coding
ENSDART00000137625 (si:dkey-76k16.6-003) 33884215-33886907 retained_intron
ENSDART00000139518 (si:dkey-76k16.6-002) 33884183-33886828 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_00020B_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027423-ENSMUSG00000027424 CGP 10090 2:144250123-144281227
GeneTranscriptPositionBiotype
ENSMUSG00000027423 (Snx5)
sorting nexin 5 		ENSMUST00000028909 (Snx5-003) 144250123-144270572 protein_coding
ENSMUST00000110030 (Snx5-001) 144250123-144270906 protein_coding
ENSMUST00000124389 (Snx5-008) 144254691-144255382 processed_transcript
ENSMUST00000125285 (Snx5-007) 144251116-144252677 processed_transcript
ENSMUST00000138745 (Snx5-006) 144251064-144253705 processed_transcript
ENSMUST00000153033 (Snx5-004) 144254794-144260762 processed_transcript
ENSMUST00000155509 (Snx5-002) 144269454-144270784 processed_transcript
ENSMUST00000156936 (Snx5-005) 144253725-144255403 processed_transcript
ENSMUSG00000065725 (Gm26165)
predicted gene, 26165 		ENSMUST00000083791 (Gm26165-201) 144261589-144261726 snoRNA
ENSMUSG00000077714 (Snord17)
small nucleolar RNA, C/D box 17 		ENSMUST00000104526 (Snord17-201) 144265979-144266216 snoRNA
ENSMUSG00000082436 (Gm11688)
predicted gene 11688 		ENSMUST00000122145 (Gm11688-001) 144261234-144261541 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020B_0001ENSDARG00000016656ENSDART00000023379ENSDARG00000020442ENSDART00000020350ENSDARG00000077481ENSDART00000131821ENSDART00000137625ENSDART00000139518CIL_00020B_0002ENSMUSG00000027423ENSMUST00000028909ENSMUST00000110030ENSMUST00000124389ENSMUST00000125285ENSMUST00000138745ENSMUST00000153033ENSMUST00000155509ENSMUST00000156936ENSMUSG00000065725ENSMUST00000083791ENSMUSG00000077714ENSMUST00000104526ENSMUSG00000082436ENSMUST00000122145
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00020B_0001ENSDARG00000016656ENSDART00000023379ENSDARG00000020442ENSDART00000020350ENSDARG00000077481ENSDART00000131821CIL_00020B_0002ENSMUSG00000027423ENSMUST00000028909ENSMUST00000110030ENSMUSG00000065725ENSMUST00000083791ENSMUSG00000077714ENSMUST00000104526ENSMUSG00000082436ENSMUST00000122145
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000016656 ENSDART00000023379 N/A N/A N/A 1.807±0.31 N/A N/A 2.762±0.66 2.500±1.85 0.110±0.00 N/A 0.575±0.00 N/A N/A N/A
ENSDARG00000020442 ENSDART00000020350 N/A N/A N/A 10.165±0.94 N/A N/A 26.378±18.08 49.901±20.04 1.281±0.00 N/A 4.438±0.00 N/A N/A N/A
ENSDARG00000077481 ENSDART00000131821 N/A N/A N/A 4.290±2.60 N/A N/A 1.144±0.29 1.487±1.14 0.165±0.00 N/A 0.181±0.00 N/A N/A N/A
ENSDART00000137625 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000139518 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027423 ENSMUST00000028909 19.112±4.21 40.264±7.46 15.015±4.16 13.463±3.13 27.974±5.31 22.141±3.54 10.645±1.36 20.558±3.10 12.614±4.66 18.581±4.39 20.013±2.35 30.211±10.90 36.752±18.63 4.360±0.65
ENSMUST00000110030 19.918±8.52 11.662±2.51 12.069±0.00 15.027±0.00 20.838±3.43 19.892±5.16 5.657±0.00 9.224±1.22 17.699±16.89 10.727±0.00 3.555±0.00 25.850±4.06 18.425±8.92 4.582±1.84
ENSMUST00000124389 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000125285 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138745 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153033 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155509 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156936 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000065725 ENSMUST00000083791 N/A N/A 8.029±1.04 N/A N/A N/A N/A N/A 7.702±1.13 N/A N/A 916.181±909.24 9.035±1.25 N/A
ENSMUSG00000077714 ENSMUST00000104526 19.944±18.47 21.104±11.80 0.991±0.38 1.353±0.61 27.665±5.61 25.588±4.45 11.026±4.36 25.711±6.33 23.174±20.44 21.309±4.51 0.387±0.08 21.787±11.19 11.126±11.95 14.795±6.27
ENSMUSG00000082436 ENSMUST00000122145 0.495±0.00 N/A 0.083±0.02 0.249±0.04 0.658±0.14 0.816±0.06 N/A 0.338±0.12 0.366±0.20 0.290±0.03 0.153±0.00 0.759±0.29 0.502±0.16 0.206±0.00

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