C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: sorting nexin 5
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027423 Snx5 10090 - 2:144250123-144270906 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000028909 Snx5-003 144250123-144270572 protein_coding
  ENSMUST00000110030 Snx5-001 144250123-144270906 protein_coding
  ENSMUST00000124389 Snx5-008 144254691-144255382 processed_transcript
  ENSMUST00000125285 Snx5-007 144251116-144252677 processed_transcript
  ENSMUST00000138745 Snx5-006 144251064-144253705 processed_transcript
  ENSMUST00000153033 Snx5-004 144254794-144260762 processed_transcript
  ENSMUST00000155509 Snx5-002 144269454-144270784 processed_transcript
  ENSMUST00000156936 Snx5-005 144253725-144255403 processed_transcript

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028909ENSMUST00000110030
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028909 19.112±4.21 40.264±7.46 15.015±4.16 13.463±3.13 27.974±5.31 22.141±3.54 10.645±1.36 20.558±3.10 12.614±4.66 18.581±4.39 20.013±2.35 30.211±10.90 36.752±18.63 4.360±0.65
ENSMUST00000110030 19.918±8.52 11.662±2.51 12.069±0.00 15.027±0.00 20.838±3.43 19.892±5.16 5.657±0.00 9.224±1.22 17.699±16.89 10.727±0.00 3.555±0.00 25.850±4.06 18.425±8.92 4.582±1.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0002 VISTA 2:143876906-144478692
CIL_0002MX CIL_0002MX_0002 CGP 2:144033059-144270906
CIL_00020B CIL_00020B_0002 CGP 2:144250123-144281227

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006907 ISS pinocytosis
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0031313 ISS extrinsic component of endosome membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 ISS early endosome membrane
GO:0035091 ISS phosphatidylinositol binding
GO:0070685 ISS macropinocytic cup

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000020442 snx5 sorting nexin 5 protein_coding Danio_rerio
ENSG00000089006 SNX5 sorting nexin 5 protein_coding Homo_sapiens

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