C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000028909 Snx5-003 ENSMUSG00000027423 10090 - 2:144250123-144270572 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000028909
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000028909 19.112±4.21 40.264±7.46 15.015±4.16 13.463±3.13 27.974±5.31 22.141±3.54 10.645±1.36 20.558±3.10 12.614±4.66 18.581±4.39 20.013±2.35 30.211±10.90 36.752±18.63 4.360±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YD CIL_0008YD_0002 VISTA 2:143876906-144478692
CIL_0002MX CIL_0002MX_0002 CGP 2:144033059-144270906
CIL_00020B CIL_00020B_0002 CGP 2:144250123-144281227

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005768 IBA endosome
GO:0006886 IBA intracellular protein transport
GO:0006907 ISS pinocytosis
GO:0031234 ISS extrinsic component of cytoplasmic side of plasma membrane
GO:0031313 ISS extrinsic component of endosome membrane
GO:0031410 IEA cytoplasmic vesicle
GO:0031901 ISS early endosome membrane
GO:0035091 ISS phosphatidylinositol binding
GO:0070685 ISS macropinocytic cup

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000377759 SNX5-019 protein_coding Homo_sapiens 0 1995
ENST00000377768 SNX5-001 protein_coding Homo_sapiens 0 1881
ENST00000419004 SNX5-012 protein_coding Homo_sapiens 0 920
ENST00000431277 SNX5-013 protein_coding Homo_sapiens 0 893
ENST00000463050 SNX5-014 protein_coding Homo_sapiens 0 649
ENST00000469704 SNX5-007 processed_transcript Homo_sapiens 0 547
ENST00000474883 SNX5-008 processed_transcript Homo_sapiens 0 453
ENST00000475716 SNX5-010 processed_transcript Homo_sapiens 0 305
ENST00000476648 SNX5-011 processed_transcript Homo_sapiens 0 1064
ENST00000481323 SNX5-003 protein_coding Homo_sapiens 1e-29 134
ENST00000483485 SNX5-005 processed_transcript Homo_sapiens 0 966
ENST00000486039 SNX5-006 protein_coding Homo_sapiens 0 248
ENST00000490175 SNX5-002 processed_transcript Homo_sapiens 0 1755
ENST00000494401 SNX5-009 processed_transcript Homo_sapiens 0 595
ENST00000505757 SNX5P1-001 processed_pseudogene Homo_sapiens 0 422
ENST00000547000 RP11-350G24.2-001 unprocessed_pseudogene Homo_sapiens 0 1125
ENST00000606557 SNX5-018 protein_coding Homo_sapiens 0 248
ENST00000606602 SNX5-017 protein_coding Homo_sapiens 0 248

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