C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S2 pseudogene 35
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443417 RPS2P35-001 ENSG00000238172 9606 - 9:100116755-100117651 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000443417
Transcript ID Adrenal Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000443417 1.447±0.00 0.321±0.00 0.047±0.00 0.384±0.21 0.205±0.00 1.012±0.00 0.042±0.00 0.068±0.00 0.276±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000229 CIL_000229_0002 CGP 9:99979179-100301000
CIL_00022A CIL_00022A_0002 CGP 9:100099256-100352939

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170335 Rps2-ps10-002 processed_transcript Mus_musculus 0 846
ENSMUST00000117295 Rps2-ps13-001 processed_pseudogene Mus_musculus 0 846
ENSMUST00000079261 Gm6139-001 processed_pseudogene Mus_musculus 0 845
ENSMUST00000076842 Rps2-ps10-001 transcribed_processed_pseudogene Mus_musculus 0 843
ENSMUST00000118911 Gm11687-001 processed_pseudogene Mus_musculus 0 817
ENSMUST00000085368 Gm5786-201 protein_coding Mus_musculus 0 813
ENSMUST00000075898 Gm5921-001 processed_pseudogene Mus_musculus 0 800
ENSMUST00000118720 Gm11599-001 processed_pseudogene Mus_musculus 0 798
ENSMUST00000169678 Gm6576-201 protein_coding Mus_musculus 0 793
ENSMUST00000117071 Gm11249-001 processed_pseudogene Mus_musculus 0 784
ENSMUST00000121722 Gm12366-001 processed_pseudogene Mus_musculus 0 784
ENSMUST00000118634 Gm6433-001 processed_pseudogene Mus_musculus 0 774
ENSMUST00000177599 Gm5070-001 processed_pseudogene Mus_musculus 0 760
ENSMUST00000166546 Gm18025-201 protein_coding Mus_musculus 0 745
ENSMUST00000071458 Gm4968-001 processed_pseudogene Mus_musculus 0 737
ENSMUST00000095471 Rps2-ps6-201 protein_coding Mus_musculus 0 732
ENSMUST00000184266 Rps2-ps5-001 processed_pseudogene Mus_musculus 0 728
ENSMUST00000073790 Gm6311-201 pseudogene Mus_musculus 0 713
ENSMUST00000146791 Gm12091-001 processed_pseudogene Mus_musculus 0 708
ENSMUST00000122167 Gm16061-001 processed_pseudogene Mus_musculus 0 656
ENSMUST00000117512 Gm7222-001 processed_pseudogene Mus_musculus 0 632
ENSMUST00000119247 Gm15653-001 processed_pseudogene Mus_musculus 0 632
ENSDART00000110842 rps2-201 protein_coding Danio_rerio 0 625
ENSDART00000138107 rps2-001 protein_coding Danio_rerio 0 625
ENSMUST00000183369 Gm18014-001 processed_pseudogene Mus_musculus 0 488
ENSMUST00000165577 Gm17150-001 processed_pseudogene Mus_musculus 0 403
ENSDART00000141100 rps2-002 protein_coding Danio_rerio 2e-40 171
ENSDART00000133878 rps2-003 retained_intron Danio_rerio 2e-25 121

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