C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: visual system homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261980 VSX2-001 ENSG00000119614 9606 + 14:74239472-74262738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainTestisENST00000261980
Transcript ID Adipose Adrenal Brain Testis
ENST00000261980 0.077±0.00 0.037±0.00 0.060±0.00 0.203±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000233 CIL_000233_0001 CGP 14:74084796-74262738
CIL_000232 CIL_000232_0001 CGP 14:74239472-74303056

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0007601 IEA visual perception
GO:0008284 IEA positive regulation of cell proliferation
GO:0008285 IEA negative regulation of cell proliferation
GO:0043010 IEA camera-type eye development
GO:0043565 IEA sequence-specific DNA binding
GO:0045165 IEA cell fate commitment
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050896 IEA response to stimulus
GO:0060040 IEA retinal bipolar neuron differentiation
GO:0060042 IEA retina morphogenesis in camera-type eye

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000021665 Vsx2-001 protein_coding Mus_musculus 0 1626
ENSMUST00000169934 Vsx2-002 protein_coding Mus_musculus 0 1205

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