C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000236_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000011510-ENSDARG00000074244 CGP 7955 23:21815648-21928792
GeneTranscriptPositionBiotype
ENSDARG00000011510 (rcc2)
regulator of chromosome condensation 2 		ENSDART00000010647 (rcc2-001) 21815648-21829182 protein_coding
ENSDART00000134587 (rcc2-002) 21820803-21828880 protein_coding
ENSDART00000139092 (rcc2-003) 21820823-21828597 protein_coding
ENSDARG00000074244 (arhgef10lb)
Rho guanine nucleotide exchange factor (GEF) 10-like b 		ENSDART00000111966 (arhgef10lb-201) 21835130-21928792 protein_coding
ENSDART00000134741 (arhgef10lb-001) 21860970-21925196 protein_coding
ENSDART00000140253 (arhgef10lb-002) 21838369-21857197 protein_coding
CIL_000236_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000179051-ENSG00000074964 CGP 9606 1:17406760-17697874
GeneTranscriptPositionBiotype
ENSG00000074964 (ARHGEF10L)
Rho guanine nucleotide exchange factor (GEF) 10-like 		ENST00000167825 (ARHGEF10L-005) 17626007-17697868 nonsense_mediated_decay
ENST00000361221 (ARHGEF10L-001) 17539835-17697869 protein_coding
ENST00000375408 (ARHGEF10L-002) 17618316-17697868 protein_coding
ENST00000375415 (ARHGEF10L-003) 17580553-17697649 protein_coding
ENST00000466782 (ARHGEF10L-009) 17639753-17654665 processed_transcript
ENST00000469726 (ARHGEF10L-004) 17615088-17697860 processed_transcript
ENST00000482359 (ARHGEF10L-008) 17634257-17638003 processed_transcript
ENST00000482892 (ARHGEF10L-007) 17602171-17604882 processed_transcript
ENST00000495593 (ARHGEF10L-006) 17694047-17697874 retained_intron
ENSG00000179051 (RCC2)
regulator of chromosome condensation 2 		ENST00000375433 (RCC2-002) 17408676-17438561 protein_coding
ENST00000375436 (RCC2-001) 17406760-17439724 protein_coding
ENST00000474892 (RCC2-003) 17407839-17409046 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000236_0001ENSDARG00000011510ENSDART00000010647ENSDART00000134587ENSDART00000139092ENSDARG00000074244ENSDART00000111966ENSDART00000134741ENSDART00000140253CIL_000236_0002ENSG00000074964ENST00000167825ENST00000361221ENST00000375408ENST00000375415ENST00000466782ENST00000469726ENST00000482359ENST00000482892ENST00000495593ENSG00000179051ENST00000375433ENST00000375436ENST00000474892
Region; Gene Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000236_0001ENSDARG00000011510ENSDART00000010647ENSDART00000134587ENSDARG00000074244ENSDART00000111966ENSDART00000134741CIL_000236_0002ENSG00000074964ENST00000167825ENST00000361221ENST00000375408ENST00000375415ENST00000469726ENST00000495593ENSG00000179051ENST00000375433ENST00000375436ENST00000474892
Gene Transcript Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000011510 ENSDART00000010647 N/A N/A 4.137±1.53 N/A N/A 2.711±1.54 24.622±4.06 1.999±0.00 N/A N/A N/A N/A N/A
ENSDART00000134587 N/A N/A N/A N/A N/A N/A 17.028±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000139092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000074244 ENSDART00000111966 N/A N/A 10.186±1.50 N/A N/A 1.455±0.96 5.249±3.01 0.106±0.00 N/A 1.107±0.00 N/A N/A N/A
ENSDART00000134741 N/A N/A N/A N/A N/A 0.138±0.00 N/A 0.044±0.00 N/A N/A N/A N/A N/A
ENSDART00000140253 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000074964 ENST00000167825 N/A N/A N/A N/A 1.229±0.00 0.646±0.00 N/A N/A N/A N/A 9.327±0.00 3.407±0.00 N/A
ENST00000361221 N/A 0.666±0.00 0.493±0.00 0.529±0.00 0.577±0.00 N/A N/A N/A 1.561±0.00 N/A 3.999±0.00 N/A N/A
ENST00000375408 1.466±0.00 N/A 1.621±0.00 3.386±0.00 1.517±0.00 4.042±3.45 N/A N/A 2.131±1.65 18.048±0.00 3.415±2.90 2.170±0.95 1.270±0.00
ENST00000375415 N/A 2.905±0.00 0.682±0.00 0.727±0.00 N/A N/A 6.773±0.00 0.809±0.00 1.736±0.00 3.754±0.00 1.810±0.59 1.174±0.00 N/A
ENST00000466782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469726 N/A 1.121±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482359 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000482892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495593 N/A N/A N/A N/A 1.589±0.00 N/A N/A N/A N/A N/A N/A N/A 1.221±0.00
ENSG00000179051 ENST00000375433 N/A 1.187±0.00 N/A 1.229±0.00 N/A N/A N/A 1.738±0.00 N/A N/A 3.588±0.00 N/A N/A
ENST00000375436 N/A 0.535±0.00 0.837±0.00 5.509±2.26 3.660±1.47 0.953±0.13 11.094±0.00 1.113±0.70 3.859±0.00 1.051±0.00 11.011±0.00 6.351±1.54 2.697±0.13
ENST00000474892 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.453±0.00 N/A N/A N/A

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