C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10-like b
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000111966 arhgef10lb-201 ENSDARG00000074244 7955 + 23:21835130-21928792 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainHeartKidneyLiverMuscleENSDART00000111966
Transcript ID Brain Heart Kidney Liver Muscle
ENSDART00000111966 10.186±1.50 1.455±0.96 5.249±3.01 0.106±0.00 1.107±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000236 CIL_000236_0001 CGP 23:21815648-21928792

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000084207 Arhgef10-001 protein_coding Mus_musculus 1e-39 171
ENSMUST00000110800 Arhgef10-002 protein_coding Mus_musculus 8.99999e-40 171
ENSMUST00000161162 Arhgef10-003 protein_coding Mus_musculus 5e-38 163
ENSMUST00000163062 Arhgef10-007 protein_coding Mus_musculus 7e-40 171
ENST00000167825 ARHGEF10L-005 nonsense_mediated_decay Homo_sapiens 0 339
ENST00000361221 ARHGEF10L-001 protein_coding Homo_sapiens 0 455
ENST00000375408 ARHGEF10L-002 protein_coding Homo_sapiens 0 497
ENST00000375415 ARHGEF10L-003 protein_coding Homo_sapiens 0 455
ENST00000469726 ARHGEF10L-004 processed_transcript Homo_sapiens 0 497
ENST00000482359 ARHGEF10L-008 processed_transcript Homo_sapiens 8e-17 92

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