C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000167825 ARHGEF10L-005 ENSG00000074964 9606 + 1:17626007-17697868 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartOvaryPlacentaENST00000167825
Transcript ID Colon Heart Ovary Placenta
ENST00000167825 1.229±0.00 0.646±0.00 9.327±0.00 3.407±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000236 CIL_000236_0002 CGP 1:17406760-17697874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000138493 Arhgef10l-006 nonsense_mediated_decay Mus_musculus 0 2819
ENSMUST00000039204 Arhgef10l-007 protein_coding Mus_musculus 0 2080
ENSMUST00000097820 Arhgef10l-002 protein_coding Mus_musculus 0 2080
ENSMUST00000105797 Arhgef10l-005 protein_coding Mus_musculus 0 2052
ENSMUST00000105798 Arhgef10l-004 protein_coding Mus_musculus 0 2010
ENSMUST00000105799 Arhgef10l-003 protein_coding Mus_musculus 0 2010
ENSMUST00000069623 Arhgef10l-001 protein_coding Mus_musculus 0 2010
ENSMUST00000140403 Arhgef10l-010 nonsense_mediated_decay Mus_musculus 0 649
ENSDART00000111966 arhgef10lb-201 protein_coding Danio_rerio 0 339
ENSDART00000134741 arhgef10lb-001 protein_coding Danio_rerio 0 193

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