C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00024D_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000138600-ENSG00000081014 CGP 9606 15:50702266-51005900
GeneTranscriptPositionBiotype
ENSG00000081014 (AP4E1)
adaptor-related protein complex 4, epsilon 1 subunit 		ENST00000261842 (AP4E1-001) 50908673-51005900 protein_coding
ENST00000558439 (AP4E1-004) 50908673-51003217 nonsense_mediated_decay
ENST00000560508 (AP4E1-002) 50908795-51005894 protein_coding
ENST00000561004 (AP4E1-007) 50915556-50918115 processed_transcript
ENST00000561393 (AP4E1-003) 50908673-51003217 nonsense_mediated_decay
ENST00000561397 (AP4E1-006) 50997749-51003441 processed_transcript
ENST00000561441 (AP4E1-005) 50908672-50950149 nonsense_mediated_decay
ENSG00000138600 (SPPL2A)
signal peptide peptidase like 2A 		ENST00000261854 (SPPL2A-001) 50702266-50765808 protein_coding
ENST00000558146 (SPPL2A-006) 50722173-50725519 retained_intron
ENST00000558414 (SPPL2A-003) 50747504-50764561 protein_coding
ENST00000558934 (SPPL2A-004) 50707448-50747531 protein_coding
ENST00000559293 (SPPL2A-005) 50722141-50726327 processed_transcript
ENST00000559527 (SPPL2A-007) 50725916-50747508 retained_intron
ENST00000560288 (SPPL2A-002) 50747997-50765709 retained_intron
ENSG00000241130 (RP11-507J18.1)
 ENST00000470304 (RP11-507J18.1-001) 50798670-50798951 processed_pseudogene
ENSG00000259378 (DCAF13P3)
DDB1 and CUL4 associated factor 13 pseudogene 3 		ENST00000561147 (DCAF13P3-001) 50944663-50945996 processed_pseudogene
ENSG00000273674 (CTD-2378E12.1)
 ENST00000613161 (CTD-2378E12.1-002) 50839876-50908599 lincRNA
ENST00000617693 (CTD-2378E12.1-003) 50839875-50881015 lincRNA
ENST00000619889 (CTD-2378E12.1-001) 50839879-50860931 lincRNA
ENSG00000279665 (RP11-507J18.5)
 ENST00000624738 (RP11-507J18.5-001) 50742702-50743276 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_00024D_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027366-ENSMUSG00000001998 CGP 10090 2:126890391-127067909
GeneTranscriptPositionBiotype
ENSMUSG00000001998 (Ap4e1)
adaptor-related protein complex AP-4, epsilon 1 		ENSMUST00000002063 (Ap4e1-001) 127008730-127067909 protein_coding
ENSMUST00000110393 (Ap4e1-005) 127008752-127028278 nonsense_mediated_decay
ENSMUST00000110394 (Ap4e1-004) 127008724-127044824 protein_coding
ENSMUST00000129859 (Ap4e1-002) 127008721-127013572 retained_intron
ENSMUST00000142740 (Ap4e1-006) 127049311-127060349 nonsense_mediated_decay
ENSMUST00000149254 (Ap4e1-003) 127008717-127037344 retained_intron
ENSMUST00000175663 (Ap4e1-008) 127008754-127047141 nonsense_mediated_decay
ENSMUST00000177372 (Ap4e1-007) 127008754-127060520 nonsense_mediated_decay
ENSMUSG00000027366 (Sppl2a)
signal peptide peptidase like 2A 		ENSMUST00000028844 (Sppl2a-001) 126890391-126933235 protein_coding
ENSMUST00000125592 (Sppl2a-002) 126914874-126923688 retained_intron
ENSMUST00000143700 (Sppl2a-003) 126894264-126920345 protein_coding
ENSMUSG00000092918 (Gm24081)
predicted gene, 24081 		ENSMUST00000175177 (Gm24081-201) 127040561-127040685 miRNA
ENSMUSG00000098896 (Mir3473g)
microRNA 3473g 		ENSMUST00000183494 (Mir3473g-201) 126902250-126902385 miRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024D_0001ENSG00000081014ENST00000261842ENST00000558439ENST00000560508ENST00000561004ENST00000561393ENST00000561397ENST00000561441ENSG00000138600ENST00000261854ENST00000558146ENST00000558414ENST00000558934ENST00000559293ENST00000559527ENST00000560288ENSG00000241130ENST00000470304ENSG00000259378ENST00000561147ENSG00000273674ENST00000613161ENST00000617693ENST00000619889ENSG00000279665ENST00000624738CIL_00024D_0002ENSMUSG00000001998ENSMUST00000002063ENSMUST00000110393ENSMUST00000110394ENSMUST00000129859ENSMUST00000142740ENSMUST00000149254ENSMUST00000175663ENSMUST00000177372ENSMUSG00000027366ENSMUST00000028844ENSMUST00000125592ENSMUST00000143700ENSMUSG00000092918ENSMUST00000175177ENSMUSG00000098896ENSMUST00000183494
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00024D_0001ENSG00000081014ENST00000261842ENST00000560508ENST00000561393ENSG00000138600ENST00000261854ENST00000558414ENST00000558934ENST00000560288ENSG00000241130ENST00000470304ENSG00000259378ENST00000561147ENSG00000273674ENST00000613161ENST00000617693ENST00000619889ENSG00000279665ENST00000624738CIL_00024D_0002ENSMUSG00000001998ENSMUST00000002063ENSMUST00000110394ENSMUST00000129859ENSMUST00000149254ENSMUST00000177372ENSMUSG00000027366ENSMUST00000028844ENSMUST00000143700ENSMUSG00000092918ENSMUST00000175177ENSMUSG00000098896ENSMUST00000183494
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000081014 ENST00000261842 1.757±0.00 N/A N/A 0.481±0.00 1.667±0.00 0.244±0.00 0.652±0.22 1.224±0.00 N/A 0.554±0.09 N/A 0.649±0.21 0.829±0.00 0.503±0.00
ENST00000558439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560508 N/A N/A N/A N/A 1.266±0.00 N/A N/A N/A 0.464±0.22 N/A 1.160±0.00 1.580±0.00 0.761±0.00 0.377±0.00
ENST00000561004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561393 N/A N/A N/A N/A N/A N/A 0.285±0.00 N/A N/A 0.821±0.00 N/A N/A N/A N/A
ENST00000561397 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561441 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000138600 ENST00000261854 7.345±0.00 7.095±0.00 1.281±0.00 1.388±0.83 7.090±0.00 5.906±1.80 5.753±3.24 9.254±0.00 2.079±0.78 3.668±0.00 17.446±16.55 4.002±0.72 4.497±2.00 3.037±1.32
ENST00000558146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000558414 N/A N/A N/A 6.347±0.00 N/A 29.976±0.00 7.569±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000558934 10.672±0.00 11.239±0.00 N/A 2.371±0.00 10.084±0.00 6.401±0.00 8.344±0.00 12.649±0.00 12.786±0.00 8.509±0.00 N/A 4.379±0.04 11.869±2.86 5.930±1.16
ENST00000559293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000559527 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000560288 N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.576±0.00 N/A N/A N/A N/A
ENSG00000241130 ENST00000470304 N/A N/A N/A N/A 0.056±0.00 N/A 0.102±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000259378 ENST00000561147 N/A 0.076±0.00 0.559±0.00 0.135±0.06 1.518±0.00 1.688±0.00 0.235±0.17 0.039±0.02 0.270±0.24 0.468±0.40 0.321±0.25 0.161±0.21 0.092±0.00 0.113±0.05
ENSG00000273674 ENST00000613161 0.077±0.00 0.219±0.00 N/A 0.009±0.00 0.122±0.00 0.046±0.00 0.030±0.00 0.050±0.00 0.033±0.01 0.137±0.00 0.035±0.00 0.052±0.03 0.020±0.00 0.140±0.04
ENST00000617693 N/A N/A N/A N/A 0.441±0.00 N/A N/A N/A N/A 0.332±0.00 N/A N/A 0.098±0.00 N/A
ENST00000619889 N/A N/A 0.228±0.00 N/A N/A 0.095±0.00 0.144±0.00 0.102±0.00 N/A N/A N/A 0.064±0.00 0.024±0.00 N/A
ENSG00000279665 ENST00000624738 0.050±0.00 0.599±0.00 0.434±0.00 0.253±0.04 0.489±0.03 0.160±0.00 0.300±0.13 0.025±0.00 0.460±0.42 0.112±0.04 0.118±0.00 0.402±0.39 0.076±0.00 0.116±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000001998 ENSMUST00000002063 N/A 1.227±0.58 1.516±0.00 0.925±0.00 1.587±0.79 1.525±0.37 0.577±0.00 0.809±0.23 0.751±0.31 1.555±0.66 N/A 1.205±0.52 2.141±0.14 0.602±0.24
ENSMUST00000110393 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000110394 N/A 0.755±0.00 N/A N/A 0.903±0.00 N/A N/A N/A N/A N/A N/A 0.585±0.12 N/A N/A
ENSMUST00000129859 N/A 0.656±0.00 N/A N/A N/A 0.821±0.00 N/A N/A N/A N/A N/A 0.985±0.56 N/A N/A
ENSMUST00000142740 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000149254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.535±0.00 N/A N/A
ENSMUST00000175663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177372 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.077±0.08 1.556±0.42 1.373±0.00
ENSMUSG00000027366 ENSMUST00000028844 10.563±1.00 19.523±1.71 14.626±4.36 6.362±3.85 13.243±2.10 22.538±4.95 8.199±0.48 12.924±1.49 18.570±8.93 15.495±0.86 8.249±2.77 10.966±2.90 3.823±2.16 2.773±0.41
ENSMUST00000125592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143700 N/A N/A N/A N/A 14.875±0.00 N/A N/A N/A N/A N/A N/A N/A 6.088±1.32 7.266±1.67
ENSMUSG00000092918 ENSMUST00000175177 1048.890±0.00 N/A N/A 11.869±5.77 1640.325±839.82 N/A N/A 1006.880±0.00 4.963±3.89 517.293±0.00 7.236±0.00 9.215±0.00 9.826±5.65 899.717±0.00
ENSMUSG00000098896 ENSMUST00000183494 N/A N/A 9.386±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 15.654±0.00

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