C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0002CD_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000163704-ENSG00000125037 CGP 9606 3:9945542-10011116
GeneTranscriptPositionBiotype
ENSG00000125037 (EMC3)
ER membrane protein complex subunit 3
ENST00000245046 (EMC3-001) 9962537-9987120 protein_coding
ENST00000429759 (EMC3-005) 9973506-9986682 protein_coding
ENST00000470827 (EMC3-006) 9977029-10011116 protein_coding
ENST00000487465 (EMC3-003) 9968644-9986838 retained_intron
ENST00000497557 (EMC3-004) 9969729-9978297 processed_transcript
ENSG00000163704 (PRRT3)
proline-rich transmembrane protein 3
ENST00000295984 (PRRT3-003) 9945542-9952374 nonsense_mediated_decay
ENST00000411976 (PRRT3-004) 9948580-9952390 protein_coding
ENST00000412055 (PRRT3-001) 9945542-9952394 protein_coding
ENSG00000230082 (PRRT3-AS1)
PRRT3 antisense RNA 1
ENST00000431558 (PRRT3-AS1-001) 9947404-9954787 antisense
ENSG00000232901 (CYCSP10)
cytochrome c, somatic pseudogene 10
ENST00000417973 (CYCSP10-001) 10000647-10000940 processed_pseudogene
ENSG00000269982 (RP11-1020A11.2)
ENST00000602436 (RP11-1020A11.2-001) 9958717-9962539 antisense
CIL_0002CD_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000045009-ENSMUSG00000030286 CGP 10090 6:113494095-113531638
GeneTranscriptPositionBiotype
ENSMUSG00000030286 (Emc3)
ER membrane protein complex subunit 3
ENSMUST00000032425 (Emc3-001) 113514874-113531638 protein_coding
ENSMUST00000154605 (Emc3-002) 113519792-113520909 retained_intron
ENSMUSG00000045009 (Prrt3)
proline-rich transmembrane protein 3
ENSMUST00000101059 (Prrt3-201) 113494095-113501818 protein_coding
ENSMUSG00000092760 (Gm23365)
predicted gene, 23365
ENSMUST00000175019 (Gm23365-201) 113528550-113528674 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CD_0001ENSG00000125037ENST00000245046ENST00000429759ENST00000470827ENST00000487465ENST00000497557ENSG00000163704ENST00000295984ENST00000411976ENST00000412055ENSG00000230082ENST00000431558ENSG00000232901ENST00000417973ENSG00000269982ENST00000602436CIL_0002CD_0002ENSMUSG00000030286ENSMUST00000032425ENSMUST00000154605ENSMUSG00000045009ENSMUST00000101059ENSMUSG00000092760ENSMUST00000175019
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002CD_0001ENSG00000125037ENST00000245046ENST00000470827ENST00000487465ENST00000497557ENSG00000163704ENST00000295984ENST00000411976ENST00000412055ENSG00000230082ENST00000431558ENSG00000232901ENST00000417973ENSG00000269982ENST00000602436CIL_0002CD_0002ENSMUSG00000030286ENSMUST00000032425ENSMUSG00000045009ENSMUST00000101059ENSMUSG00000092760ENSMUST00000175019
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000125037 ENST00000245046 N/A N/A N/A 2.161±0.00 4.309±0.00 2.196±0.00 3.948±3.37 N/A 3.131±0.00 2.444±0.00 N/A 4.113±1.88 5.154±0.50 16.348±0.00
ENST00000429759 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470827 76.206±0.00 46.349±0.00 N/A 39.392±0.00 84.142±0.00 46.470±0.00 N/A 47.569±0.00 N/A 38.088±0.00 14.551±0.00 25.577±19.78 14.861±0.00 75.613±0.00
ENST00000487465 N/A N/A N/A N/A 2.029±0.00 1.226±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497557 33.430±0.00 19.476±0.00 N/A 11.765±0.00 31.675±0.00 12.860±6.41 12.329±7.38 23.294±0.00 N/A 15.016±4.83 51.103±0.00 4.713±0.00 N/A 32.884±0.00
ENSG00000163704 ENST00000295984 N/A N/A 0.457±0.00 N/A N/A N/A N/A N/A 0.917±0.00 0.095±0.00 0.061±0.00 0.753±0.54 0.201±0.06 0.587±0.30
ENST00000411976 N/A N/A N/A 1.085±0.00 N/A 0.228±0.00 0.216±0.00 0.249±0.00 0.411±0.00 0.028±0.00 0.095±0.00 N/A N/A N/A
ENST00000412055 0.721±0.00 1.419±0.00 0.075±0.00 4.140±2.97 1.227±0.00 0.467±0.00 0.333±0.00 0.917±0.00 0.232±0.00 0.722±0.69 0.817±0.00 1.006±1.05 0.491±0.14 1.382±0.07
ENSG00000230082 ENST00000431558 2.294±0.00 1.203±0.00 N/A N/A 5.291±0.00 0.888±0.46 0.360±0.07 0.909±0.02 0.759±0.00 0.552±0.00 9.991±8.80 0.773±0.27 1.074±0.10 1.046±0.00
ENSG00000232901 ENST00000417973 0.874±0.00 0.805±0.00 N/A 0.132±0.00 0.319±0.00 1.997±1.42 0.233±0.00 N/A N/A N/A 1.343±0.00 0.333±0.10 N/A 2.942±0.93
ENSG00000269982 ENST00000602436 N/A N/A 1.287±0.00 1.809±0.00 1.962±0.00 1.113±0.00 0.615±0.00 N/A 1.656±0.00 N/A N/A 1.502±0.16 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030286 ENSMUST00000032425 43.447±4.92 50.885±2.90 36.606±2.62 14.985±2.70 31.090±7.48 26.760±2.36 21.302±0.75 34.662±2.27 21.685±2.47 30.171±6.25 24.485±1.12 30.115±4.47 34.013±10.00 16.205±4.73
ENSMUST00000154605 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000045009 ENSMUST00000101059 0.100±0.03 0.163±0.06 0.508±0.10 1.996±1.29 0.143±0.15 0.137±0.06 0.031±0.01 0.052±0.02 0.034±0.02 0.232±0.13 0.067±0.01 0.142±0.07 0.235±0.17 0.058±0.03
ENSMUSG00000092760 ENSMUST00000175019 N/A N/A N/A 14.616±0.00 N/A N/A N/A N/A 13.716±6.51 N/A 4.495±0.00 35.003±0.00 11.854±4.65 N/A

Loading