C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transformer 2 alpha homolog (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031841 Tra2a-201 ENSMUSG00000029817 10090 - 6:49243921-49264052 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031841
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031841 18.653±5.88 10.988±2.89 36.568±11.45 55.278±27.05 13.150±4.23 14.446±3.69 9.363±1.03 9.895±2.67 27.832±21.95 18.863±4.18 6.957±1.64 27.774±9.06 44.413±16.98 14.212±4.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00022J CIL_00022J_0002 CGP 6:49085221-49264052
CIL_0002CW CIL_0002CW_0002 CGP 6:49243921-49341582

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000398 IEA mRNA splicing, via spliceosome
GO:0003723 ISS RNA binding
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IEA nucleolus
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000008595 tra2a-001 protein_coding Danio_rerio 0 196
ENSDART00000151175 tra2a-006 protein_coding Danio_rerio 4e-39 167
ENSDART00000145115 tra2a-005 protein_coding Danio_rerio 4e-39 167
ENSDART00000133873 tra2a-003 nonsense_mediated_decay Danio_rerio 5e-38 163
ENST00000297071 TRA2A-001 protein_coding Homo_sapiens 0 1190
ENST00000392502 TRA2A-201 protein_coding Homo_sapiens 0 992
ENST00000412785 RP4-800M22.2-001 processed_pseudogene Homo_sapiens 0 590
ENST00000448549 TRA2A-004 nonsense_mediated_decay Homo_sapiens 0 342
ENST00000474586 TRA2A-005 processed_transcript Homo_sapiens 0 806
ENST00000490942 TRA2A-003 processed_transcript Homo_sapiens 0 462
ENST00000494255 TRA2A-002 retained_intron Homo_sapiens 0 808
ENST00000538367 TRA2A-202 protein_coding Homo_sapiens 0 1007
ENST00000621813 TRA2A-203 protein_coding Homo_sapiens 0 1007

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