C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002ZG_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000256950-ENSG00000158023 CGP 9606 12:121888809-122003927
GeneTranscriptPositionBiotype
ENSG00000110801 (PSMD9)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 		ENST00000261817 (PSMD9-001) 121888771-121917863 protein_coding
ENST00000361485 (PSMD9-010) 121914218-121916643 retained_intron
ENST00000535293 (PSMD9-009) 121893817-121916584 nonsense_mediated_decay
ENST00000537407 (PSMD9-002) 121888732-121916644 nonsense_mediated_decay
ENST00000538613 (PSMD9-005) 121888784-121899853 protein_coding
ENST00000540962 (PSMD9-006) 121888762-121916549 nonsense_mediated_decay
ENST00000541212 (PSMD9-003) 121888731-121918297 protein_coding
ENST00000542602 (PSMD9-011) 121888786-121916399 protein_coding
ENST00000543699 (PSMD9-004) 121888845-121916584 nonsense_mediated_decay
ENST00000544254 (PSMD9-007) 121902048-121916615 retained_intron
ENST00000544724 (PSMD9-008) 121897271-121916568 retained_intron
ENSG00000158023 (WDR66)
WD repeat domain 66 		ENST00000288912 (WDR66-001) 121917862-122003927 protein_coding
ENST00000397454 (WDR66-003) 121918592-121972069 protein_coding
ENST00000428465 (WDR66-010) 121996886-122003807 retained_intron
ENST00000535257 (WDR66-007) 121952695-121959739 retained_intron
ENST00000540779 (WDR66-002) 121921408-121933655 retained_intron
ENST00000543211 (WDR66-006) 121947669-121959089 retained_intron
ENST00000545752 (WDR66-008) 121961994-121969966 processed_transcript
ENST00000545988 (WDR66-009) 122001704-122003927 processed_transcript
ENST00000546044 (WDR66-005) 121934250-121949211 retained_intron
ENSG00000239082 (RNU7-170P)
RNA, U7 small nuclear 170 pseudogene 		ENST00000459303 (RNU7-170P-201) 121908103-121908163 snRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0002ZG_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029440-ENSMUSG00000029442 CGP 10090 5:123228190-123327484
GeneTranscriptPositionBiotype
ENSMUSG00000029440 (Psmd9)
proteasome (prosome, macropain) 26S subunit, non-ATPase, 9 		ENSMUST00000100729 (Psmd9-001) 123228190-123250131 protein_coding
ENSMUST00000133386 (Psmd9-002) 123228190-123245268 processed_transcript
ENSMUSG00000029442 (Wdr66)
WD repeat domain 66 		ENSMUST00000069311 (Wdr66-201) 123293901-123326630 protein_coding
ENSMUST00000121964 (Wdr66-001) 123252102-123327484 protein_coding
ENSMUST00000125979 (Wdr66-004) 123302516-123326649 retained_intron
ENSMUST00000143629 (Wdr66-002) 123271595-123297779 retained_intron
ENSMUST00000150155 (Wdr66-003) 123290009-123326794 nonsense_mediated_decay
ENSMUST00000163092 (Wdr66-202) 123271595-123297777 protein_coding
ENSMUST00000170536 (Wdr66-203) 123271595-123293814 protein_coding
ENSMUSG00000094664 (Rpl35a-ps6)
ribosomal protein L35A, pseudogene 6 		ENSMUST00000148282 (Rpl35a-ps6-001) 123255481-123255813 processed_pseudogene
ENSMUSG00000097213 (Gm26745)
predicted gene, 26745 		ENSMUST00000181022 (Gm26745-201) 123047373-123230871 lincRNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZG_0001ENSG00000110801ENST00000261817ENST00000361485ENST00000535293ENST00000537407ENST00000538613ENST00000540962ENST00000541212ENST00000542602ENST00000543699ENST00000544254ENST00000544724ENSG00000158023ENST00000288912ENST00000397454ENST00000428465ENST00000535257ENST00000540779ENST00000543211ENST00000545752ENST00000545988ENST00000546044ENSG00000239082ENST00000459303CIL_0002ZG_0002ENSMUSG00000029440ENSMUST00000100729ENSMUST00000133386ENSMUSG00000029442ENSMUST00000069311ENSMUST00000121964ENSMUST00000125979ENSMUST00000143629ENSMUST00000150155ENSMUST00000163092ENSMUST00000170536ENSMUSG00000094664ENSMUST00000148282ENSMUSG00000097213ENSMUST00000181022
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002ZG_0001ENSG00000110801ENST00000261817ENST00000361485ENST00000537407ENST00000538613ENST00000540962ENST00000542602ENST00000543699ENST00000544254ENSG00000158023ENST00000288912ENST00000397454ENST00000535257ENST00000540779ENST00000545752ENST00000546044ENSG00000239082ENST00000459303CIL_0002ZG_0002ENSMUSG00000029440ENSMUST00000100729ENSMUST00000133386ENSMUSG00000029442ENSMUST00000069311ENSMUST00000121964ENSMUST00000143629ENSMUST00000150155ENSMUST00000163092ENSMUST00000170536ENSMUSG00000094664ENSMUST00000148282ENSMUSG00000097213ENSMUST00000181022
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000110801 ENST00000261817 N/A N/A 1.529±0.00 4.120±0.00 3.133±0.00 N/A N/A N/A N/A N/A N/A 3.788±0.97 2.161±0.00 N/A
ENST00000361485 N/A N/A N/A N/A N/A 0.894±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535293 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000537407 7.615±0.00 22.007±0.00 N/A 2.327±0.00 12.082±0.00 7.079±3.38 5.478±4.70 17.762±12.46 6.522±2.87 9.173±0.00 2.215±0.30 25.548±20.44 20.200±7.65 25.712±0.00
ENST00000538613 14.316±0.00 N/A N/A N/A 24.528±0.00 N/A 1.502±0.00 N/A N/A N/A 11.166±0.00 N/A N/A N/A
ENST00000540962 N/A N/A N/A N/A N/A N/A 9.157±0.00 N/A N/A N/A 6.467±0.00 6.405±0.00 N/A N/A
ENST00000541212 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000542602 9.591±0.00 N/A N/A 5.017±0.00 N/A N/A N/A N/A 4.061±0.00 N/A 5.294±0.00 N/A N/A N/A
ENST00000543699 8.156±0.00 17.623±0.00 N/A 12.392±0.00 6.389±4.24 16.139±0.00 0.582±0.00 26.473±0.00 13.499±0.00 6.657±4.46 4.364±0.00 16.096±1.00 11.968±3.40 N/A
ENST00000544254 N/A N/A N/A N/A N/A N/A 0.408±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000544724 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000158023 ENST00000288912 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.281±0.00 N/A 3.303±0.00 N/A 13.647±1.55
ENST00000397454 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.355±0.00 N/A N/A N/A 6.009±0.00
ENST00000428465 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000535257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.255±0.00 N/A N/A N/A
ENST00000540779 N/A N/A 0.605±0.00 N/A N/A N/A N/A N/A N/A 0.769±0.00 N/A N/A N/A N/A
ENST00000543211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000545752 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 43.979±0.00
ENST00000545988 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546044 N/A N/A N/A N/A N/A N/A N/A 5.501±0.00 N/A N/A N/A N/A N/A N/A
ENSG00000239082 ENST00000459303 N/A 3.024±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 107.939±0.00 N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029440 ENSMUST00000100729 6.108±1.32 5.313±1.19 4.778±0.29 7.112±1.15 4.855±0.93 5.330±0.94 4.656±0.30 10.638±0.27 9.679±3.93 6.701±0.33 5.914±1.10 8.872±2.82 8.883±4.25 9.918±2.39
ENSMUST00000133386 1.239±0.00 1.374±0.49 N/A 1.478±0.00 1.123±0.35 1.704±0.49 N/A N/A 1.309±0.00 1.039±0.06 N/A 2.022±0.36 N/A 1.289±0.00
ENSMUSG00000029442 ENSMUST00000069311 N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 N/A 0.469±0.01 6.554±1.13 1.749±0.93 24.934±0.00
ENSMUST00000121964 1.312±0.34 0.195±0.10 0.537±0.06 0.332±0.10 0.549±0.26 0.094±0.03 0.183±0.05 0.498±0.16 0.062±0.05 2.769±0.48 0.171±0.09 1.495±0.69 0.497±0.30 8.666±5.24
ENSMUST00000125979 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000143629 N/A 0.083±0.01 N/A N/A N/A 0.091±0.00 N/A N/A 0.036±0.00 N/A N/A 0.397±0.00 N/A N/A
ENSMUST00000150155 1.731±0.00 N/A 0.946±0.00 0.376±0.00 N/A 0.320±0.04 N/A 0.786±0.08 0.166±0.02 N/A 0.304±0.16 3.581±0.30 N/A N/A
ENSMUST00000163092 0.312±0.00 0.087±0.01 N/A N/A N/A 0.093±0.00 N/A N/A 0.039±0.00 N/A N/A 0.407±0.00 N/A N/A
ENSMUST00000170536 0.958±0.40 0.210±0.13 0.451±0.01 0.441±0.00 0.477±0.21 0.166±0.06 0.161±0.00 0.272±0.06 0.080±0.03 1.368±0.19 0.140±0.03 1.002±0.47 0.395±0.34 3.724±0.79
ENSMUSG00000094664 ENSMUST00000148282 N/A N/A N/A 3.689±0.00 N/A N/A N/A N/A 19.366±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000097213 ENSMUST00000181022 0.134±0.05 0.296±0.09 0.163±0.07 0.198±0.07 0.205±0.08 0.300±0.14 0.047±0.01 0.192±0.08 0.171±0.09 0.265±0.10 0.017±0.00 0.340±0.22 0.128±0.06 0.125±0.03

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