C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) 26S subunit, non-ATPase, 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537407 PSMD9-002 ENSG00000110801 9606 + 12:121888732-121916644 nonsense_mediated_decay

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000537407
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000537407 7.615±0.00 22.007±0.00 2.327±0.00 12.082±0.00 7.079±3.38 5.478±4.70 17.762±12.46 6.522±2.87 9.173±0.00 2.215±0.30 25.548±20.44 20.200±7.65 25.712±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZH CIL_0002ZH_0001 CGP 12:121839527-121918297

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000209 TAS protein polyubiquitination
GO:0000278 TAS mitotic cell cycle
GO:0002474 TAS antigen processing and presentation of peptide antigen via MHC class I
GO:0002479 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent
GO:0003713 ISS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005634 ISS nucleus
GO:0005654 TAS nucleoplasm
GO:0005829 TAS cytosol
GO:0005838 NAS proteasome regulatory particle
GO:0006511 NAS ubiquitin-dependent protein catabolic process
GO:0006521 TAS regulation of cellular amino acid metabolic process
GO:0006915 TAS apoptotic process
GO:0006977 TAS DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008540 IDA proteasome regulatory particle, base subcomplex
GO:0010467 TAS gene expression
GO:0016032 TAS viral process
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0031145 TAS anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0032024 ISS positive regulation of insulin secretion
GO:0034641 TAS cellular nitrogen compound metabolic process
GO:0042590 TAS antigen processing and presentation of exogenous peptide antigen via MHC class I
GO:0042981 TAS regulation of apoptotic process
GO:0043066 TAS negative regulation of apoptotic process
GO:0043425 ISS bHLH transcription factor binding
GO:0044281 TAS small molecule metabolic process
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0046676 ISS negative regulation of insulin secretion
GO:0051436 TAS negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051437 TAS positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0051439 TAS regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle
GO:0070682 IMP proteasome regulatory particle assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000133386 Psmd9-002 processed_transcript Mus_musculus 0 523
ENSMUST00000100729 Psmd9-001 protein_coding Mus_musculus 0 523

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