C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000307_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000006459-ENSG00000157800 CGP 9606 7:140084746-140404433
GeneTranscriptPositionBiotype
ENSG00000006459 (KDM7A)
lysine (K)-specific demethylase 7A 		ENST00000397560 (KDM7A-001) 140084746-140177035 protein_coding
ENST00000472616 (KDM7A-002) 140084855-140119142 nonsense_mediated_decay
ENST00000478996 (KDM7A-003) 140090903-140092141 retained_intron
ENSG00000157800 (SLC37A3)
solute carrier family 37, member 3 		ENST00000326232 (SLC37A3-001) 140333752-140398549 protein_coding
ENST00000340308 (SLC37A3-007) 140333752-140398457 protein_coding
ENST00000447932 (SLC37A3-004) 140333752-140398502 protein_coding
ENST00000460560 (SLC37A3-002) 140335321-140398508 retained_intron
ENST00000461089 (SLC37A3-011) 140358640-140398550 processed_transcript
ENST00000462881 (SLC37A3-015) 140364459-140398478 nonsense_mediated_decay
ENST00000464834 (SLC37A3-018) 140351889-140369662 nonsense_mediated_decay
ENST00000464865 (SLC37A3-003) 140351520-140398504 retained_intron
ENST00000467233 (SLC37A3-016) 140379878-140382474 retained_intron
ENST00000469193 (SLC37A3-012) 140352062-140398532 protein_coding
ENST00000469636 (SLC37A3-009) 140333791-140343489 protein_coding
ENST00000473060 (SLC37A3-008) 140333754-140344086 retained_intron
ENST00000473707 (SLC37A3-017) 140351876-140369682 processed_transcript
ENST00000477006 (SLC37A3-024) 140335290-140345907 protein_coding
ENST00000477571 (SLC37A3-006) 140293693-140398489 nonsense_mediated_decay
ENST00000484416 (SLC37A3-020) 140351361-140364491 nonsense_mediated_decay
ENST00000485139 (SLC37A3-027) 140335472-140337825 retained_intron
ENST00000485538 (SLC37A3-026) 140334989-140343530 protein_coding
ENST00000485734 (SLC37A3-021) 140335455-140352100 protein_coding
ENST00000485861 (SLC37A3-019) 140348626-140369654 protein_coding
ENST00000487319 (SLC37A3-028) 140348458-140351405 retained_intron
ENST00000490760 (SLC37A3-014) 140351431-140398481 nonsense_mediated_decay
ENST00000491357 (SLC37A3-022) 140334891-140348686 protein_coding
ENST00000491505 (SLC37A3-010) 140382483-140404310 protein_coding
ENST00000492027 (SLC37A3-023) 140335105-140351357 protein_coding
ENST00000493423 (SLC37A3-029) 140400336-140404433 retained_intron
ENST00000495257 (SLC37A3-013) 140379259-140398507 processed_transcript
ENST00000498469 (SLC37A3-025) 140334870-140345911 protein_coding
ENSG00000202472 (RNA5SP248)
RNA, 5S ribosomal pseudogene 248 		ENST00000365602 (RNA5SP248-201) 140386781-140386907 rRNA
ENSG00000223113 (RNA5SP247)
RNA, 5S ribosomal pseudogene 247 		ENST00000411181 (RNA5SP247-201) 140370441-140370545 rRNA
ENSG00000241661 (PPP1R2P6)
protein phosphatase 1, regulatory (inhibitor) subunit 2 pseudogene 6 		ENST00000478565 (PPP1R2P6-001) 140292752-140293339 processed_pseudogene
ENSG00000251728 (Y_RNA)
Y RNA 		ENST00000515919 (Y_RNA.1-859) 140094697-140094792 misc_RNA
ENSG00000260231 (JHDM1D-AS1)
JHDM1D antisense RNA 1 (head to head) 		ENST00000566699 (JHDM1D-AS1-001) 140177261-140179640 antisense
ENSG00000270512 (RP5-1136G2.1)
 ENST00000605126 (RP5-1136G2.1-001) 140282465-140282920 processed_pseudogene
CIL_000307_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000042599-ENSMUSG00000029924 CGP 10090 6:39136623-39377707
GeneTranscriptPositionBiotype
ENSMUSG00000029924 (Slc37a3)
solute carrier family 37 (glycerol-3-phosphate transporter), member 3 		ENSMUST00000090243 (Slc37a3-201) 39334770-39377707 protein_coding
ENSMUSG00000042599 (Kdm7a)
lysine (K)-specific demethylase 7A 		ENSMUST00000002305 (Kdm7a-001) 39136623-39206789 protein_coding
ENSMUST00000127036 (Kdm7a-002) 39142110-39154682 processed_transcript
ENSMUSG00000073144 (4930599N23Rik)
RIKEN cDNA 4930599N23 gene 		ENSMUST00000101511 (4930599N23Rik-201) 39118408-39119955 antisense
ENSMUST00000146981 (4930599N23Rik-001) 39118473-39148312 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestis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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000307_0001ENSG00000006459ENST00000397560ENST00000472616ENSG00000157800ENST00000326232ENST00000340308ENST00000447932ENST00000460560ENST00000467233ENST00000469636ENST00000473060ENST00000473707ENST00000484416ENST00000485538ENST00000487319ENST00000491357ENST00000498469ENSG00000202472ENST00000365602ENSG00000223113ENST00000411181ENSG00000241661ENST00000478565ENSG00000251728ENST00000515919ENSG00000260231ENST00000566699ENSG00000270512ENST00000605126CIL_000307_0002ENSMUSG00000029924ENSMUST00000090243ENSMUSG00000042599ENSMUST00000002305ENSMUST00000127036ENSMUSG00000073144ENSMUST00000101511
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006459 ENST00000397560 3.628±0.00 N/A 1.760±0.00 1.302±0.49 3.628±2.32 3.224±1.37 1.718±0.14 0.752±0.20 1.621±0.99 3.089±1.77 3.819±2.56 1.705±1.46 1.205±0.15 5.658±2.86
ENST00000472616 1.195±0.00 N/A N/A 0.550±0.00 0.740±0.00 0.576±0.00 N/A 0.665±0.00 0.369±0.00 2.420±0.00 4.837±0.00 0.848±0.70 0.953±0.55 0.923±0.00
ENST00000478996 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000157800 ENST00000326232 4.059±0.00 3.765±0.00 N/A N/A 2.908±0.93 1.666±0.92 1.189±0.00 4.498±0.00 1.501±0.94 1.826±0.72 N/A 5.986±2.20 7.636±0.08 1.299±0.55
ENST00000340308 N/A N/A 1.936±0.00 N/A N/A 1.385±0.00 N/A N/A N/A N/A N/A N/A 1.514±0.01 1.333±0.54
ENST00000447932 N/A N/A N/A 3.086±0.00 3.939±0.00 N/A N/A 1.361±0.00 N/A N/A N/A 3.662±0.00 N/A N/A
ENST00000460560 N/A N/A 1.201±0.00 N/A N/A N/A N/A N/A 1.415±0.00 N/A N/A N/A N/A N/A
ENST00000461089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000462881 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464834 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464865 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000467233 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.786±0.00 N/A N/A N/A
ENST00000469193 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469636 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.389±0.00 0.569±0.00 7.017±2.22 N/A 1.086±0.00
ENST00000473060 N/A N/A N/A N/A 3.010±0.00 N/A N/A N/A N/A N/A 0.754±0.00 2.459±0.00 N/A N/A
ENST00000473707 N/A N/A N/A N/A 18.666±0.00 N/A N/A N/A 9.312±0.00 N/A N/A 20.326±0.00 N/A N/A
ENST00000477006 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477571 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000484416 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 39.773±0.00 48.211±0.00 7.181±0.00
ENST00000485139 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485538 N/A N/A N/A N/A N/A N/A N/A 2.845±0.00 N/A N/A N/A N/A N/A N/A
ENST00000485734 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485861 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487319 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.766±0.00 N/A N/A N/A
ENST00000490760 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491357 N/A N/A N/A 6.899±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000491505 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492027 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000493423 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495257 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498469 N/A N/A N/A N/A N/A 6.857±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000202472 ENST00000365602 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.305±0.00 N/A N/A
ENSG00000223113 ENST00000411181 N/A 0.929±0.00 N/A N/A N/A N/A 1.041±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000241661 ENST00000478565 N/A N/A N/A 0.162±0.00 0.057±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.444±0.03
ENSG00000251728 ENST00000515919 1.350±0.00 N/A N/A N/A N/A 0.496±0.00 N/A N/A N/A 1.140±0.00 N/A N/A N/A 0.930±0.00
ENSG00000260231 ENST00000566699 6.644±0.00 1.934±0.00 0.358±0.00 1.396±1.03 1.739±0.33 1.907±0.80 1.544±1.10 1.327±1.23 0.897±0.70 1.041±0.63 0.967±0.88 1.868±1.80 3.467±0.29 2.938±0.50
ENSG00000270512 ENST00000605126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.141±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029924 ENSMUST00000090243 8.597±3.92 5.953±0.80 10.446±0.23 7.775±2.25 6.511±1.43 11.794±0.88 3.176±0.22 11.314±1.08 4.097±1.47 7.999±0.48 2.155±0.65 9.711±2.31 6.336±2.64 1.820±0.60
ENSMUSG00000042599 ENSMUST00000002305 4.104±1.52 3.075±0.12 2.268±0.01 2.040±0.79 3.940±1.10 3.292±0.33 1.835±0.27 1.996±0.56 2.924±1.95 4.406±1.09 2.827±0.94 6.157±1.76 0.685±0.33 2.917±0.94
ENSMUST00000127036 N/A N/A N/A 2.631±0.00 N/A N/A N/A N/A N/A N/A N/A 2.193±0.00 0.220±0.00 3.424±0.00
ENSMUSG00000073144 ENSMUST00000101511 N/A 3.479±0.32 N/A N/A 3.136±0.25 N/A N/A N/A N/A 3.835±0.00 N/A 3.618±0.67 N/A 3.878±0.26
ENSMUST00000146981 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

Loading