C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00030N_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000054152-ENSDARG00000054150 CGP 7955 20:37289964-37322882
GeneTranscriptPositionBiotype
ENSDARG00000054152 (nmbr)
neuromedin B receptor 		ENSDART00000076309 (nmbr-001) 37289964-37311715 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_00030N_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000135577-ENSG00000203733 CGP 9606 6:142058330-142135151
GeneTranscriptPositionBiotype
ENSG00000135577 (NMBR)
neuromedin B receptor 		ENST00000258042 (NMBR-001) 142075608-142088799 protein_coding
ENST00000480652 (NMBR-002) 142058330-142075922 processed_transcript
ENSG00000270983 (RP11-137J7.3)
 ENST00000604304 (RP11-137J7.3-001) 142062717-142063053 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00030N_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000019865-ENSMUSG00000019865 CGP 10090 10:14705591-14770850
GeneTranscriptPositionBiotype
ENSMUSG00000019865 (Nmbr)
neuromedin B receptor 		ENSMUST00000020015 (Nmbr-001) 14760157-14770850 protein_coding
ENSMUST00000186175 (Nmbr-005) 14705627-14720451 retained_intron
ENSMUST00000186382 (Nmbr-007) 14760219-14770583 nonsense_mediated_decay
ENSMUST00000187449 (Nmbr-004) 14705597-14753324 processed_transcript
ENSMUST00000188021 (Nmbr-006) 14705609-14759019 processed_transcript
ENSMUST00000190114 (Nmbr-002) 14705621-14767296 protein_coding
ENSMUST00000190751 (Nmbr-008) 14760219-14770583 protein_coding
ENSMUST00000191238 (Nmbr-003) 14705591-14766771 protein_coding
ENSMUSG00000019867 (Gje1)
gap junction protein, epsilon 1 		ENSMUST00000020016 (Gje1-001) 14715623-14718214 protein_coding
ENSMUSG00000093798 (Gm8355)
predicted pseudogene 8355 		ENSMUST00000177767 (Gm8355-201) 14745362-14746117 processed_pseudogene
ENSMUSG00000096963 (B230364G03Rik)
RIKEN cDNA B230364G03 gene 		ENSMUST00000181479 (B230364G03Rik-001) 14758635-14760720 antisense

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030N_0001ENSDARG00000054152ENSDART00000076309CIL_00030N_0002ENSG00000135577ENST00000258042ENST00000480652ENSG00000270983ENST00000604304CIL_00030N_0003ENSMUSG00000019865ENSMUST00000020015ENSMUST00000186175ENSMUST00000186382ENSMUST00000187449ENSMUST00000188021ENSMUST00000190114ENSMUST00000190751ENSMUST00000191238ENSMUSG00000019867ENSMUST00000020016ENSMUSG00000093798ENSMUST00000177767ENSMUSG00000096963ENSMUST00000181479
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00030N_0001ENSDARG00000054152ENSDART00000076309CIL_00030N_0002ENSG00000135577ENST00000258042ENST00000480652ENSG00000270983ENST00000604304CIL_00030N_0003ENSMUSG00000019865ENSMUST00000020015ENSMUST00000186175ENSMUST00000186382ENSMUST00000187449ENSMUST00000190114ENSMUST00000190751ENSMUSG00000019867ENSMUST00000020016ENSMUSG00000093798ENSMUST00000177767ENSMUSG00000096963ENSMUST00000181479
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000054152 ENSDART00000076309 N/A N/A N/A 0.943±0.33 N/A N/A 0.036±0.00 0.036±0.00 N/A N/A 0.039±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000135577 ENST00000258042 N/A N/A N/A 0.259±0.09 N/A N/A 0.018±0.01 0.065±0.00 N/A N/A N/A 0.102±0.02 N/A 0.352±0.07
ENST00000480652 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.550±0.31
ENSG00000270983 ENST00000604304 0.083±0.00 0.045±0.00 N/A 0.089±0.00 0.258±0.17 N/A 0.040±0.00 0.045±0.00 0.122±0.00 0.135±0.00 0.040±0.00 N/A N/A 0.139±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000019865 ENSMUST00000020015 0.040±0.00 N/A 0.030±0.01 0.271±0.00 0.049±0.00 N/A 0.100±0.04 0.061±0.03 0.030±0.02 0.036±0.00 0.253±0.10 0.071±0.00 0.035±0.01 N/A
ENSMUST00000186175 N/A N/A N/A N/A N/A N/A N/A N/A 0.025±0.01 N/A 0.300±0.00 0.099±0.00 N/A N/A
ENSMUST00000186382 N/A N/A N/A N/A N/A 0.116±0.00 0.075±0.00 N/A 0.063±0.02 0.092±0.00 0.136±0.03 N/A 0.043±0.02 N/A
ENSMUST00000187449 N/A N/A 0.089±0.00 N/A N/A N/A N/A N/A 0.031±0.00 N/A N/A 0.383±0.29 0.115±0.00 N/A
ENSMUST00000188021 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190114 N/A N/A 0.088±0.00 0.459±0.00 N/A N/A 0.186±0.00 0.077±0.06 0.069±0.02 0.081±0.03 0.337±0.19 0.029±0.00 0.036±0.00 N/A
ENSMUST00000190751 0.055±0.02 0.067±0.01 0.035±0.01 N/A 0.034±0.00 0.065±0.01 0.031±0.00 0.076±0.00 0.045±0.00 N/A 0.224±0.00 0.143±0.01 N/A N/A
ENSMUST00000191238 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000019867 ENSMUST00000020016 0.041±0.00 0.114±0.00 0.017±0.01 0.010±0.00 0.031±0.00 N/A N/A 0.050±0.03 0.034±0.02 0.050±0.01 0.033±0.00 0.144±0.08 0.008±0.00 0.124±0.07
ENSMUSG00000093798 ENSMUST00000177767 4.701±0.77 0.327±0.10 14.090±13.76 14.304±9.97 2.067±0.94 0.354±0.17 1.578±0.64 1.730±0.59 6.312±13.60 0.715±0.17 0.092±0.04 5.947±6.49 0.259±0.14 0.324±0.12
ENSMUSG00000096963 ENSMUST00000181479 N/A N/A 0.013±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.013±0.00 N/A N/A

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