C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_000339_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000087510-ENSG00000101144 CGP 9606 20:56629302-57266629
GeneTranscriptPositionBiotype
ENSG00000087510 (TFAP2C)
transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 		ENST00000201031 (TFAP2C-001) 56629302-56639283 protein_coding
ENST00000416606 (TFAP2C-002) 56630234-56631547 protein_coding
ENSG00000101144 (BMP7)
bone morphogenetic protein 7 		ENST00000395863 (BMP7-001) 57168748-57266628 protein_coding
ENST00000395864 (BMP7-003) 57170531-57266342 protein_coding
ENST00000433911 (BMP7-004) 57173220-57265778 protein_coding
ENST00000450594 (BMP7-002) 57172996-57266629 protein_coding
ENST00000460817 (BMP7-005) 57171039-57224685 processed_transcript
ENST00000463939 (BMP7-006) 57177696-57187156 processed_transcript
ENST00000476877 (BMP7-007) 57170917-57173589 retained_intron
ENST00000524700 (BMP7-009) 57202474-57224840 processed_transcript
ENST00000530870 (BMP7-008) 57202474-57244034 processed_transcript
ENSG00000203266 (RP11-560A15.3)
 ENST00000366097 (RP11-560A15.3-001) 57114915-57122092 lincRNA
ENSG00000231078 (RP11-560A15.4)
 ENST00000442780 (RP11-560A15.4-001) 57105741-57107128 lincRNA
ENSG00000231604 (RP5-897D18.1)
 ENST00000458293 (RP5-897D18.1-001) 56730397-56731460 lincRNA
ENSG00000235032 (BMP7-AS1)
BMP7 antisense RNA 1 		ENST00000445956 (BMP7-AS1-001) 57214872-57215866 antisense
ENSG00000237000 (PTMAP6)
prothymosin, alpha pseudogene 6 		ENST00000439110 (PTMAP6-001) 56700837-56701514 processed_pseudogene
ENSG00000241821 (RN7SL170P)
RNA, 7SL, cytoplasmic 170, pseudogene 		ENST00000487098 (RN7SL170P-201) 56688401-56688695 misc_RNA
ENSG00000280220 (RP11-560A15.6)
 ENST00000624276 (RP11-560A15.6-001) 57161822-57163775 TEC

Homo sapiens Ensembl (GRCh38)

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CIL_000339_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028640-ENSMUSG00000008999 CGP 10090 2:172549593-172940321
GeneTranscriptPositionBiotype
ENSMUSG00000008999 (Bmp7)
bone morphogenetic protein 7 		ENSMUST00000009143 (Bmp7-001) 172868012-172940321 protein_coding
ENSMUST00000137247 (Bmp7-002) 172916118-172940092 retained_intron
ENSMUSG00000028640 (Tfap2c)
transcription factor AP-2, gamma 		ENSMUST00000030391 (Tfap2c-001) 172549593-172558622 protein_coding
ENSMUST00000099058 (Tfap2c-004) 172550782-172558619 protein_coding
ENSMUST00000122982 (Tfap2c-003) 172550764-172557826 processed_transcript
ENSMUST00000128406 (Tfap2c-002) 172550653-172558607 processed_transcript
ENSMUST00000142633 (Tfap2c-005) 172552116-172553518 processed_transcript
ENSMUST00000170744 (Tfap2c-201) 172550991-172558619 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000339_0001ENSG00000087510ENST00000201031ENST00000416606ENSG00000101144ENST00000395863ENST00000395864ENST00000433911ENST00000450594ENST00000460817ENST00000463939ENST00000476877ENST00000524700ENST00000530870ENSG00000203266ENST00000366097ENSG00000231078ENST00000442780ENSG00000231604ENST00000458293ENSG00000235032ENST00000445956ENSG00000237000ENST00000439110ENSG00000241821ENST00000487098ENSG00000280220ENST00000624276CIL_000339_0002ENSMUSG00000008999ENSMUST00000009143ENSMUST00000137247ENSMUSG00000028640ENSMUST00000030391ENSMUST00000099058ENSMUST00000122982ENSMUST00000128406ENSMUST00000142633ENSMUST00000170744
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_000339_0001ENSG00000087510ENST00000201031ENSG00000101144ENST00000395863ENST00000395864ENST00000433911ENST00000450594ENST00000460817ENST00000476877ENSG00000203266ENST00000366097ENSG00000231078ENST00000442780ENSG00000231604ENST00000458293ENSG00000235032ENST00000445956ENSG00000237000ENST00000439110ENSG00000241821ENST00000487098ENSG00000280220ENST00000624276CIL_000339_0002ENSMUSG00000008999ENSMUST00000009143ENSMUST00000137247ENSMUSG00000028640ENSMUST00000030391ENSMUST00000099058ENSMUST00000122982ENSMUST00000128406ENSMUST00000170744
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087510 ENST00000201031 0.310±0.00 N/A 0.062±0.00 0.030±0.00 5.453±4.44 0.678±0.00 0.096±0.00 0.498±0.40 0.182±0.18 0.840±0.68 N/A 1.004±0.67 13.245±3.45 1.122±0.00
ENST00000416606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101144 ENST00000395863 N/A 0.078±0.00 0.575±0.00 6.084±4.30 N/A 1.030±0.81 1.958±1.64 2.486±0.00 0.424±0.00 0.844±0.00 N/A 1.241±0.00 14.779±2.57 1.273±1.19
ENST00000395864 0.414±0.00 N/A N/A 0.935±0.00 N/A N/A 0.795±0.58 N/A 0.563±0.00 N/A N/A 4.343±4.19 24.516±7.41 0.337±0.00
ENST00000433911 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.161±0.00 N/A N/A N/A N/A
ENST00000450594 N/A N/A N/A N/A N/A 0.120±0.00 N/A N/A 0.357±0.00 N/A N/A N/A N/A N/A
ENST00000460817 N/A N/A N/A N/A N/A 0.374±0.00 N/A N/A N/A N/A 0.217±0.00 13.390±0.00 29.981±11.62 N/A
ENST00000463939 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000476877 N/A 0.113±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524700 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000530870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000203266 ENST00000366097 0.041±0.00 0.339±0.00 N/A 0.301±0.00 0.130±0.00 0.156±0.00 0.097±0.00 0.085±0.00 0.019±0.00 0.039±0.00 0.110±0.00 0.033±0.01 0.044±0.00 0.129±0.08
ENSG00000231078 ENST00000442780 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.109±0.00
ENSG00000231604 ENST00000458293 N/A N/A N/A N/A 0.086±0.00 N/A N/A N/A N/A 0.078±0.00 N/A N/A 0.104±0.00 0.883±0.39
ENSG00000235032 ENST00000445956 N/A N/A N/A 0.115±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.650±1.16
ENSG00000237000 ENST00000439110 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.158±0.00 N/A N/A
ENSG00000241821 ENST00000487098 N/A 0.117±0.00 N/A 0.126±0.00 0.060±0.00 N/A N/A N/A N/A 0.058±0.00 N/A N/A N/A 0.054±0.00
ENSG00000280220 ENST00000624276 N/A N/A N/A N/A N/A N/A 0.695±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000008999 ENSMUST00000009143 8.649±8.45 27.973±5.32 14.639±0.61 5.970±3.59 3.184±1.31 8.524±0.68 0.567±0.22 18.459±1.83 0.908±0.57 1.625±0.29 0.136±0.03 7.807±3.55 1.569±1.20 0.576±0.38
ENSMUST00000137247 0.145±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.236±0.00 N/A N/A N/A
ENSMUSG00000028640 ENSMUST00000030391 0.374±0.08 N/A 1.807±0.22 3.057±1.87 2.760±0.99 N/A N/A N/A 0.024±0.00 0.207±0.03 0.031±0.00 0.417±0.27 30.486±11.80 0.069±0.03
ENSMUST00000099058 0.140±0.00 N/A 0.766±0.00 0.501±0.00 0.903±0.15 N/A N/A N/A N/A 0.067±0.03 N/A 0.459±0.06 6.938±1.09 0.033±0.00
ENSMUST00000122982 N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.024±0.01 N/A 0.061±0.04 N/A 0.030±0.00 21.320±0.00 0.039±0.00
ENSMUST00000128406 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A 0.014±0.01 0.135±0.07 N/A N/A
ENSMUST00000142633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170744 N/A N/A N/A 0.026±0.00 0.937±0.00 N/A N/A N/A 0.012±0.00 N/A 0.022±0.01 0.427±0.20 N/A 0.048±0.00

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