C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor AP-2, gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000030391 Tfap2c-001 ENSMUSG00000028640 10090 + 2:172549593-172558622 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverLungMuscleOvaryPlacentaTestisENSMUST00000030391
Transcript ID Adipose Bladder Brain Breast Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000030391 0.374±0.08 1.807±0.22 3.057±1.87 2.760±0.99 0.024±0.00 0.207±0.03 0.031±0.00 0.417±0.27 30.486±11.80 0.069±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0002 VISTA 2:172130534-172731364
CIL_0003D9 CIL_0003D9_0002 CGP 2:172472520-172558622
CIL_000339 CIL_000339_0002 CGP 2:172549593-172940321

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0000981 IDA sequence-specific DNA binding RNA polymerase II transcription factor activity
GO:0001829 IMP trophectodermal cell differentiation
GO:0001942 IGI hair follicle development
GO:0003334 IGI keratinocyte development
GO:0003677 IDA DNA binding
GO:0003700 IDA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0006355 IMP regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0006366 IDA transcription from RNA polymerase II promoter
GO:0019827 IDA stem cell maintenance
GO:0021877 IMP forebrain neuron fate commitment
GO:0021987 IMP cerebral cortex development
GO:0030154 IMP cell differentiation
GO:0030718 IMP germ-line stem cell maintenance
GO:0035019 IMP somatic stem cell maintenance
GO:0043588 IGI skin development
GO:0045682 IMP regulation of epidermis development
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048733 IGI sebaceous gland development
GO:0060598 IMP dichotomous subdivision of terminal units involved in mammary gland duct morphogenesis
GO:0060750 IMP epithelial cell proliferation involved in mammary gland duct elongation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000201031 TFAP2C-001 protein_coding Homo_sapiens 0 1471

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