C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily c, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000254480 SMARCC1-001 ENSG00000173473 9606 - 3:47585272-47781917 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000254480
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000254480 1.429±0.00 1.816±0.00 1.864±0.00 5.930±0.00 2.779±0.00 0.557±0.00 0.944±0.14 1.579±0.41 1.383±0.00 2.007±0.00 1.869±0.99 1.255±0.00 4.993±2.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000350 CIL_000350_0003 CGP 3:47562239-47782106

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0000980 IDA RNA polymerase II distal enhancer sequence-specific DNA binding
GO:0001741 IEA XY body
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0003713 NAS transcription coactivator activity
GO:0005515 IPI:IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IDA nucleus
GO:0006337 IDA nucleosome disassembly
GO:0006338 IDA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006357 NAS regulation of transcription from RNA polymerase II promoter
GO:0007399 IEA nervous system development
GO:0008286 IEA insulin receptor signaling pathway
GO:0009887 IEA organ morphogenesis
GO:0016514 IDA SWI/SNF complex
GO:0031492 IDA nucleosomal DNA binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0043234 IDA protein complex
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0047485 IPI protein N-terminus binding
GO:0071564 ISS npBAF complex
GO:0071565 ISS nBAF complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000088716 Smarcc1-001 protein_coding Mus_musculus 0 4329

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