C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00036K_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000184012-ENSG00000183421 CGP 9606 21:41464551-41767106
GeneTranscriptPositionBiotype
ENSG00000183421 (RIPK4)
receptor-interacting serine-threonine kinase 4 		ENST00000332512 (RIPK4-001) 41739369-41767106 protein_coding
ENST00000352483 (RIPK4-201) 41739369-41767089 protein_coding
ENSG00000184012 (TMPRSS2)
transmembrane protease, serine 2 		ENST00000332149 (TMPRSS2-001) 41464551-41508159 protein_coding
ENST00000398585 (TMPRSS2-201) 41464553-41508065 protein_coding
ENST00000424093 (TMPRSS2-003) 41473446-41508092 protein_coding
ENST00000454499 (TMPRSS2-008) 41467734-41531116 protein_coding
ENST00000455813 (TMPRSS2-010) 41494356-41506604 protein_coding
ENST00000458356 (TMPRSS2-009) 41466009-41507982 protein_coding
ENST00000463138 (TMPRSS2-004) 41488489-41508114 processed_transcript
ENST00000469395 (TMPRSS2-005) 41467766-41468837 retained_intron
ENST00000488556 (TMPRSS2-006) 41465890-41468102 retained_intron
ENST00000489201 (TMPRSS2-011) 41529789-41531098 retained_intron
ENST00000497881 (TMPRSS2-002) 41486467-41508158 processed_transcript
ENSG00000223400 (AP006748.1)
 ENST00000418874 (AP006748.1-001) 41576135-41581319 lincRNA
ENSG00000227702 (LINC00111)
long intergenic non-protein coding RNA 111 		ENST00000413718 (LINC00111-001) 41679181-41697336 lincRNA
ENSG00000232401 (LINC00112)
long intergenic non-protein coding RNA 112 		ENST00000432830 (LINC00112-001) 41716436-41717580 antisense
ENSG00000232806 (AP001610.9)
 ENST00000415820 (AP001610.9-001) 41559125-41562958 lincRNA
ENSG00000236384 (LINC00479)
long intergenic non-protein coding RNA 479 		ENST00000412102 (LINC00479-001) 41711520-41715775 lincRNA
ENST00000457881 (LINC00479-002) 41712157-41714055 lincRNA
ENST00000586552 (LINC00479-003) 41712856-41715753 lincRNA
ENST00000589300 (LINC00479-004) 41712856-41715753 lincRNA
ENSG00000236883 (AP001615.9)
 ENST00000423276 (AP001615.9-001) 41739373-41741308 antisense
CIL_00036K_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000385-ENSMUSG00000005251 CGP 10090 16:97564684-97763737
GeneTranscriptPositionBiotype
ENSMUSG00000000385 (Tmprss2)
transmembrane protease, serine 2 		ENSMUST00000000395 (Tmprss2-201) 97564684-97611195 protein_coding
ENSMUSG00000005251 (Ripk4)
receptor-interacting serine-threonine kinase 4 		ENSMUST00000019386 (Ripk4-001) 97741933-97763737 protein_coding
ENSMUST00000113743 (Ripk4-002) 97741933-97763491 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036K_0001ENSG00000183421ENST00000332512ENST00000352483ENSG00000184012ENST00000332149ENST00000398585ENST00000424093ENST00000454499ENST00000455813ENST00000458356ENST00000463138ENST00000469395ENST00000488556ENST00000489201ENST00000497881ENSG00000223400ENST00000418874ENSG00000227702ENST00000413718ENSG00000232401ENST00000432830ENSG00000232806ENST00000415820ENSG00000236384ENST00000412102ENST00000457881ENST00000586552ENST00000589300ENSG00000236883ENST00000423276CIL_00036K_0002ENSMUSG00000000385ENSMUST00000000395ENSMUSG00000005251ENSMUST00000019386ENSMUST00000113743
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00036K_0001ENSG00000183421ENST00000332512ENSG00000184012ENST00000332149ENST00000398585ENST00000424093ENST00000454499ENST00000458356ENST00000469395ENST00000497881ENSG00000223400ENST00000418874ENSG00000227702ENST00000413718ENSG00000232401ENST00000432830ENSG00000232806ENST00000415820ENSG00000236384ENST00000412102ENST00000457881ENST00000589300ENSG00000236883ENST00000423276CIL_00036K_0002ENSMUSG00000000385ENSMUST00000000395ENSMUSG00000005251ENSMUST00000019386ENSMUST00000113743
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000183421 ENST00000332512 0.066±0.00 0.011±0.00 1.458±0.00 0.039±0.01 1.215±0.47 0.652±0.35 0.031±0.01 4.287±2.86 2.655±2.12 2.772±1.73 N/A 2.928±2.25 3.321±0.99 2.083±0.32
ENST00000352483 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000184012 ENST00000332149 N/A N/A 1.693±0.00 N/A 2.137±0.30 3.076±2.00 N/A 24.589±0.00 3.517±2.39 9.919±6.97 0.032±0.00 10.975±12.85 0.055±0.00 0.441±0.00
ENST00000398585 N/A N/A N/A N/A N/A N/A N/A 0.321±0.00 1.426±0.00 N/A N/A 1.236±0.00 N/A N/A
ENST00000424093 N/A N/A N/A N/A N/A N/A N/A 0.927±0.00 N/A N/A N/A N/A N/A N/A
ENST00000454499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.521±0.00
ENST00000455813 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458356 N/A N/A 3.331±0.00 N/A 3.812±0.00 8.911±0.00 N/A N/A 0.473±0.00 N/A N/A 90.160±0.00 0.081±0.00 0.880±0.00
ENST00000463138 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469395 N/A 0.176±0.00 N/A 0.152±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000489201 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497881 N/A 0.227±0.00 N/A 0.060±0.03 N/A N/A 0.020±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000223400 ENST00000418874 N/A N/A N/A N/A 0.164±0.00 0.155±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227702 ENST00000413718 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.068±0.00 N/A N/A N/A 0.062±0.00
ENSG00000232401 ENST00000432830 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.631±0.13
ENSG00000232806 ENST00000415820 N/A N/A N/A N/A N/A 0.056±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000236384 ENST00000412102 N/A N/A N/A N/A 0.009±0.00 N/A N/A 0.009±0.00 N/A N/A N/A 0.035±0.01 N/A N/A
ENST00000457881 N/A N/A N/A N/A N/A N/A N/A N/A 0.193±0.00 N/A N/A 0.164±0.00 N/A N/A
ENST00000586552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000589300 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.033±0.00 N/A N/A N/A 0.278±0.15
ENSG00000236883 ENST00000423276 0.211±0.00 0.247±0.00 N/A 0.039±0.00 1.904±0.00 1.767±0.00 N/A 11.610±0.00 5.855±0.00 6.994±0.00 N/A 1.682±0.00 2.384±0.00 2.742±0.44
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000385 ENSMUST00000000395 3.267±2.28 0.042±0.02 124.704±28.08 0.031±0.02 24.957±4.22 170.448±27.23 0.354±0.07 44.594±4.00 2.097±0.94 20.660±5.24 0.031±0.01 3.648±1.81 38.446±21.53 0.260±0.17
ENSMUSG00000005251 ENSMUST00000019386 1.437±1.41 0.150±0.06 21.606±3.81 0.339±0.07 5.486±0.95 13.648±0.63 0.202±0.12 6.057±0.48 1.545±0.28 8.954±0.65 0.030±0.01 3.009±1.03 8.771±2.70 0.683±0.17
ENSMUST00000113743 N/A N/A N/A N/A 1.471±0.00 N/A N/A N/A N/A N/A N/A 0.241±0.02 1.498±0.00 0.228±0.00

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