C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003BY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000173163-ENSG00000170340 CGP 9606 2:61888724-62224731
GeneTranscriptPositionBiotype
ENSG00000115484 (CCT4)
chaperonin containing TCP1, subunit 4 (delta) 		ENST00000394440 (CCT4-001) 61868089-61888804 protein_coding
ENST00000461370 (CCT4-004) 61887948-61888458 processed_transcript
ENST00000461540 (CCT4-003) 61868430-61877026 processed_transcript
ENST00000544079 (CCT4-201) 61868125-61888671 protein_coding
ENSG00000170340 (B3GNT2)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 		ENST00000301998 (B3GNT2-001) 62196113-62224731 protein_coding
ENST00000405767 (B3GNT2-002) 62215518-62224549 protein_coding
ENSG00000173163 (COMMD1)
copper metabolism (Murr1) domain containing 1 		ENST00000311832 (COMMD1-001) 61905647-62136247 protein_coding
ENST00000427417 (COMMD1-005) 62000979-62147247 protein_coding
ENST00000444166 (COMMD1-008) 62135845-62146926 protein_coding
ENST00000445644 (COMMD1-004) 61905647-62000875 nonsense_mediated_decay
ENST00000455659 (COMMD1-003) 61905758-62000847 nonsense_mediated_decay
ENST00000458337 (COMMD1-006) 62000979-62146914 protein_coding
ENST00000471704 (COMMD1-007) 61905647-62001092 retained_intron
ENST00000472729 (COMMD1-002) 61888724-62136058 processed_transcript
ENSG00000271657 (RP11-270B14.1)
 ENST00000605375 (RP11-270B14.1-001) 62168862-62171163 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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Structures from Ensembl
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CIL_0003BY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000098650-ENSMUSG00000098650 CGP 10090 11:22834744-22982090
GeneTranscriptPositionBiotype
ENSMUSG00000044068 (Zrsr1)
zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1 		ENSMUST00000049506 (Zrsr1-001) 22973215-22976496 protein_coding
ENSMUSG00000051650 (B3gnt2)
UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 2 		ENSMUST00000055549 (B3gnt2-002) 22834865-22860488 protein_coding
ENSMUST00000062844 (B3gnt2-001) 22834747-22860101 protein_coding
ENSMUST00000173660 (B3gnt2-003) 22836583-22860961 protein_coding
ENSMUSG00000092455 (Gm20456)
predicted gene 20456 		ENSMUST00000174690 (Gm20456-001) 22839299-22842604 processed_transcript
ENSMUSG00000098650 (Gm28048)
predicted gene, 28048 		ENSMUST00000160826 (Gm28048-001) 22834744-22982090 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BY_0001ENSG00000115484ENST00000394440ENST00000461370ENST00000461540ENST00000544079ENSG00000170340ENST00000301998ENST00000405767ENSG00000173163ENST00000311832ENST00000427417ENST00000444166ENST00000445644ENST00000455659ENST00000458337ENST00000471704ENST00000472729ENSG00000271657ENST00000605375CIL_0003BY_0002ENSMUSG00000044068ENSMUST00000049506ENSMUSG00000051650ENSMUST00000055549ENSMUST00000062844ENSMUST00000173660ENSMUSG00000092455ENSMUST00000174690ENSMUSG00000098650ENSMUST00000160826
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003BY_0001ENSG00000115484ENST00000394440ENST00000544079ENSG00000170340ENST00000301998ENST00000405767ENSG00000173163ENST00000311832ENST00000471704ENST00000472729ENSG00000271657ENST00000605375CIL_0003BY_0002ENSMUSG00000044068ENSMUST00000049506ENSMUSG00000051650ENSMUST00000055549ENSMUST00000062844ENSMUSG00000092455ENSMUST00000174690ENSMUSG00000098650ENSMUST00000160826
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115484 ENST00000394440 37.409±0.00 20.147±0.00 1.251±0.00 20.129±0.00 22.719±0.00 19.596±17.08 11.207±0.00 20.048±0.00 8.146±0.00 10.600±7.90 21.234±0.00 41.650±16.35 25.230±6.01 31.814±15.25
ENST00000461370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000461540 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000544079 N/A 14.385±0.00 4.827±0.00 11.231±4.21 6.272±2.26 13.180±9.20 5.789±4.23 12.702±8.14 9.630±1.45 11.265±3.49 12.708±2.97 55.382±49.64 32.209±28.01 61.153±42.78
ENSG00000170340 ENST00000301998 3.776±0.00 6.596±0.00 5.166±0.00 2.727±0.19 3.408±0.96 3.911±0.71 2.295±0.50 8.691±4.91 3.099±0.68 9.408±2.29 0.470±0.38 4.225±2.50 8.081±3.69 2.746±1.05
ENST00000405767 0.902±0.00 2.918±0.00 0.831±0.00 0.988±0.38 2.865±0.22 0.848±0.00 2.396±0.00 N/A 0.649±0.00 2.072±0.00 0.390±0.00 2.577±1.48 2.342±0.21 0.676±0.19
ENSG00000173163 ENST00000311832 N/A N/A 6.140±0.00 15.007±0.00 7.044±0.00 6.461±0.00 6.764±0.00 12.074±0.00 7.104±0.00 N/A 11.425±0.00 N/A 23.693±0.00 N/A
ENST00000427417 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000444166 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000445644 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000455659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000458337 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000471704 N/A N/A N/A N/A N/A N/A 8.158±0.00 N/A 10.627±0.00 8.958±0.00 N/A N/A N/A N/A
ENST00000472729 N/A N/A N/A N/A N/A N/A 24.996±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000271657 ENST00000605375 N/A 0.095±0.00 N/A N/A 0.123±0.00 N/A 0.029±0.00 N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000044068 ENSMUST00000049506 1.930±0.18 N/A 5.311±0.00 2.001±0.00 2.375±0.00 N/A 1.832±0.00 N/A 6.762±1.82 4.269±0.00 3.355±0.07 8.774±1.23 4.649±0.99 5.595±0.00
ENSMUSG00000051650 ENSMUST00000055549 2.928±1.26 N/A 7.384±0.89 N/A 7.160±0.00 N/A 2.453±0.32 N/A 3.402±0.00 4.900±0.00 N/A N/A N/A N/A
ENSMUST00000062844 8.179±3.62 40.465±9.61 9.349±2.75 N/A 8.637±2.50 26.378±3.18 3.741±0.57 14.932±1.87 5.079±1.11 13.373±2.42 N/A 12.214±2.92 6.109±2.11 N/A
ENSMUST00000173660 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000092455 ENSMUST00000174690 0.502±0.18 1.008±0.30 0.578±0.14 0.307±0.09 0.392±0.17 0.887±0.29 0.155±0.00 0.621±0.38 0.311±0.15 0.287±0.00 N/A 0.587±0.44 0.432±0.19 N/A
ENSMUSG00000098650 ENSMUST00000160826 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.986±0.00 N/A N/A

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