C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049506 Zrsr1-001 ENSMUSG00000044068 10090 + 11:22973215-22976496 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000049506
Transcript ID Adipose Bladder Brain Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049506 1.930±0.18 5.311±0.00 2.001±0.00 2.375±0.00 1.832±0.00 6.762±1.82 4.269±0.00 3.355±0.07 8.774±1.23 4.649±0.99 5.595±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BY CIL_0003BY_0002 CGP 11:22834744-22982090
CIL_0004OO CIL_0004OO_0002 CGP 11:22834747-22982382

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0030529 IEA ribonucleoprotein complex
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307771 ZRSR2-001 protein_coding Homo_sapiens 0 963
ENST00000315599 CD209-001 protein_coding Homo_sapiens 0 263
ENST00000391338 ZRSR1-001 protein_coding Homo_sapiens 0 928
ENST00000497856 REEP5-002 retained_intron Homo_sapiens 0 331
ENST00000506997 CTC-487M23.8-001 nonsense_mediated_decay Homo_sapiens 0 928
ENST00000511865 REEP5-006 nonsense_mediated_decay Homo_sapiens 0 331
ENST00000512790 CTC-487M23.8-004 processed_transcript Homo_sapiens 0 928

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