C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003D9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000213714-ENSG00000087510 CGP 9606 20:56533246-56639283
GeneTranscriptPositionBiotype
ENSG00000087510 (TFAP2C)
transcription factor AP-2 gamma (activating enhancer binding protein 2 gamma) 		ENST00000201031 (TFAP2C-001) 56629302-56639283 protein_coding
ENST00000416606 (TFAP2C-002) 56630234-56631547 protein_coding
ENSG00000213714 (FAM209B)
family with sequence similarity 209, member B 		ENST00000371325 (FAM209B-001) 56533246-56536520 protein_coding
ENSG00000214541 (RPS4XP3)
ribosomal protein S4X pseudogene 3 		ENST00000398541 (RPS4XP3-001) 56601701-56602113 processed_pseudogene
ENSG00000225657 (RP5-843L14.1)
 ENST00000434176 (RP5-843L14.1-001) 56577563-56596126 lincRNA
ENST00000437350 (RP5-843L14.1-002) 56596310-56598621 lincRNA

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0003D9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000027505-ENSMUSG00000028640 CGP 10090 2:172472520-172558622
GeneTranscriptPositionBiotype
ENSMUSG00000027505 (Fam209)
family with sequence similarity 209 		ENSMUST00000029007 (Fam209-001) 172472520-172474331 protein_coding
ENSMUSG00000028640 (Tfap2c)
transcription factor AP-2, gamma 		ENSMUST00000030391 (Tfap2c-001) 172549593-172558622 protein_coding
ENSMUST00000099058 (Tfap2c-004) 172550782-172558619 protein_coding
ENSMUST00000122982 (Tfap2c-003) 172550764-172557826 processed_transcript
ENSMUST00000128406 (Tfap2c-002) 172550653-172558607 processed_transcript
ENSMUST00000142633 (Tfap2c-005) 172552116-172553518 processed_transcript
ENSMUST00000170744 (Tfap2c-201) 172550991-172558619 protein_coding
ENSMUSG00000081344 (Gm14303)
predicted gene 14303 		ENSMUST00000121320 (Gm14303-001) 172509521-172509691 processed_pseudogene

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003D9_0001ENSG00000087510ENST00000201031ENST00000416606ENSG00000213714ENST00000371325ENSG00000214541ENST00000398541ENSG00000225657ENST00000434176ENST00000437350CIL_0003D9_0002ENSMUSG00000027505ENSMUST00000029007ENSMUSG00000028640ENSMUST00000030391ENSMUST00000099058ENSMUST00000122982ENSMUST00000128406ENSMUST00000142633ENSMUST00000170744ENSMUSG00000081344ENSMUST00000121320
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003D9_0001ENSG00000087510ENST00000201031ENSG00000213714ENST00000371325ENSG00000214541ENST00000398541ENSG00000225657ENST00000434176CIL_0003D9_0002ENSMUSG00000027505ENSMUST00000029007ENSMUSG00000028640ENSMUST00000030391ENSMUST00000099058ENSMUST00000122982ENSMUST00000128406ENSMUST00000170744ENSMUSG00000081344ENSMUST00000121320
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000087510 ENST00000201031 0.310±0.00 N/A 0.062±0.00 0.030±0.00 5.453±4.44 0.678±0.00 0.096±0.00 0.498±0.40 0.182±0.18 0.840±0.68 N/A 1.004±0.67 13.245±3.45 1.122±0.00
ENST00000416606 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000213714 ENST00000371325 0.174±0.00 0.566±0.00 N/A 0.220±0.00 0.160±0.00 N/A 0.184±0.00 0.457±0.00 0.040±0.00 0.126±0.00 N/A 0.172±0.06 0.047±0.00 28.367±12.04
ENSG00000214541 ENST00000398541 0.171±0.00 N/A N/A 0.036±0.00 0.107±0.00 N/A N/A 0.070±0.00 N/A N/A 0.060±0.00 0.072±0.00 N/A 0.095±0.00
ENSG00000225657 ENST00000434176 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.065±0.00
ENST00000437350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000027505 ENSMUST00000029007 N/A 0.314±0.18 N/A 0.235±0.00 0.337±0.13 0.231±0.14 0.120±0.00 0.171±0.03 0.125±0.04 0.185±0.09 0.091±0.04 0.265±0.11 0.434±0.16 215.017±43.68
ENSMUSG00000028640 ENSMUST00000030391 0.374±0.08 N/A 1.807±0.22 3.057±1.87 2.760±0.99 N/A N/A N/A 0.024±0.00 0.207±0.03 0.031±0.00 0.417±0.27 30.486±11.80 0.069±0.03
ENSMUST00000099058 0.140±0.00 N/A 0.766±0.00 0.501±0.00 0.903±0.15 N/A N/A N/A N/A 0.067±0.03 N/A 0.459±0.06 6.938±1.09 0.033±0.00
ENSMUST00000122982 N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.024±0.01 N/A 0.061±0.04 N/A 0.030±0.00 21.320±0.00 0.039±0.00
ENSMUST00000128406 N/A N/A N/A N/A N/A N/A N/A N/A 0.008±0.00 N/A 0.014±0.01 0.135±0.07 N/A N/A
ENSMUST00000142633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170744 N/A N/A N/A 0.026±0.00 0.937±0.00 N/A N/A N/A 0.012±0.00 N/A 0.022±0.01 0.427±0.20 N/A 0.048±0.00
ENSMUSG00000081344 ENSMUST00000121320 N/A N/A N/A 12.966±0.00 N/A N/A N/A N/A 40.269±0.00 N/A N/A N/A N/A N/A

Loading