C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S4X pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398541 RPS4XP3-001 ENSG00000214541 9606 + 20:56601701-56602113 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastKidneyMuscleOvaryTestisENST00000398541
Transcript ID Adipose Brain Breast Kidney Muscle Ovary Testis
ENST00000398541 0.171±0.00 0.036±0.00 0.107±0.00 0.070±0.00 0.060±0.00 0.072±0.00 0.095±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099D CIL_00099D_0001 VISTA 20:56155251-56756351
CIL_0003D9 CIL_0003D9_0001 CGP 20:56533246-56639283

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033683 Rps4x-001 protein_coding Mus_musculus 0 507
ENSMUST00000119790 Gm13680-001 processed_pseudogene Mus_musculus 0 484
ENSMUST00000183728 Gm15013-002 protein_coding Mus_musculus 0 468
ENSMUST00000183537 Gm15013-001 translated_processed_pseudogene Mus_musculus 0 468
ENSMUST00000165198 Gm9294-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000119465 Gm12757-001 processed_pseudogene Mus_musculus 0 331
ENSMUST00000121609 Gm12267-001 processed_pseudogene Mus_musculus 0 206
ENSMUST00000152739 Rps4x-002 retained_intron Mus_musculus 0 191

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