C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000105778-ENSG00000170852 CGP 9606 7:32495426-32894131
GeneTranscriptPositionBiotype
ENSG00000105778 (AVL9)
AVL9 homolog (S. cerevisiase) 		ENST00000318709 (AVL9-003) 32495489-32588721 protein_coding
ENST00000409301 (AVL9-001) 32495526-32586166 protein_coding
ENST00000446718 (AVL9-002) 32543255-32588711 protein_coding
ENST00000459629 (AVL9-004) 32495521-32539269 processed_transcript
ENST00000467779 (AVL9-007) 32580763-32584206 retained_intron
ENST00000470500 (AVL9-008) 32580207-32584167 retained_intron
ENST00000485228 (AVL9-005) 32495426-32552250 processed_transcript
ENST00000497020 (AVL9-006) 32580791-32586108 retained_intron
ENSG00000170852 (KBTBD2)
kelch repeat and BTB (POZ) domain containing 2 		ENST00000304056 (KBTBD2-001) 32868172-32891897 protein_coding
ENST00000423022 (KBTBD2-005) 32879564-32891153 protein_coding
ENST00000424468 (KBTBD2-003) 32879592-32892733 protein_coding
ENST00000452926 (KBTBD2-004) 32879462-32892144 protein_coding
ENST00000453627 (KBTBD2-002) 32879516-32894131 protein_coding
ENST00000477129 (KBTBD2-007) 32874522-32879493 retained_intron
ENST00000485611 (KBTBD2-006) 32870808-32892144 processed_transcript
ENST00000621876 (KBTBD2-201) 32870087-32879672 protein_coding
ENSG00000229358 (DPY19L1P1)
DPY19L1 pseudogene 1 		ENST00000417811 (DPY19L1P1-001) 32580949-32761787 unprocessed_pseudogene
ENSG00000231952 (DPY19L1P2)
DPY19L1 pseudogene 2 		ENST00000426647 (DPY19L1P2-001) 32812757-32838570 unprocessed_pseudogene
ENSG00000237004 (ZNRF2P1)
zinc and ring finger 2 pseudogene 1 		ENST00000441407 (ZNRF2P1-001) 32728569-32729011 processed_pseudogene
ENSG00000272905 (RP11-265E18.1)
 ENST00000608314 (RP11-265E18.1-001) 32845394-32846061 lincRNA
ENSG00000273014 (LINC00997)
long intergenic non-protein coding RNA 997 		ENST00000609151 (LINC00997-001) 32758882-32759353 lincRNA

Homo sapiens Ensembl (GRCh38)

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CIL_0003FC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029787-ENSMUSG00000059486 CGP 10090 6:56714927-56797813
GeneTranscriptPositionBiotype
ENSMUSG00000029787 (Avl9)
AVL9 homolog (S. cerevisiase) 		ENSMUST00000031805 (Avl9-001) 56714927-56761911 protein_coding
ENSMUST00000176560 (Avl9-003) 56740913-56754052 retained_intron
ENSMUST00000177249 (Avl9-002) 56714938-56737157 retained_intron
ENSMUSG00000059486 (Kbtbd2)
kelch repeat and BTB (POZ) domain containing 2 		ENSMUST00000114321 (Kbtbd2-002) 56777525-56797813 protein_coding
ENSMUST00000114323 (Kbtbd2-001) 56777524-56797736 protein_coding
ENSMUST00000124994 (Kbtbd2-004) 56789523-56796747 processed_transcript
ENSMUST00000151308 (Kbtbd2-003) 56789378-56797279 protein_coding

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FC_0001ENSG00000105778ENST00000318709ENST00000409301ENST00000446718ENST00000459629ENST00000467779ENST00000470500ENST00000485228ENST00000497020ENSG00000170852ENST00000304056ENST00000423022ENST00000424468ENST00000452926ENST00000453627ENST00000477129ENST00000485611ENST00000621876ENSG00000229358ENST00000417811ENSG00000231952ENST00000426647ENSG00000237004ENST00000441407ENSG00000272905ENST00000608314ENSG00000273014ENST00000609151CIL_0003FC_0002ENSMUSG00000029787ENSMUST00000031805ENSMUST00000176560ENSMUST00000177249ENSMUSG00000059486ENSMUST00000114321ENSMUST00000114323ENSMUST00000124994ENSMUST00000151308
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FC_0001ENSG00000105778ENST00000318709ENST00000409301ENST00000446718ENST00000459629ENSG00000170852ENST00000304056ENSG00000229358ENST00000417811ENSG00000231952ENST00000426647ENSG00000237004ENST00000441407ENSG00000272905ENST00000608314ENSG00000273014ENST00000609151CIL_0003FC_0002ENSMUSG00000029787ENSMUST00000031805ENSMUST00000176560ENSMUSG00000059486ENSMUST00000114321ENSMUST00000114323
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000105778 ENST00000318709 3.667±0.00 2.515±0.00 0.992±0.00 4.612±1.43 2.573±0.39 1.829±0.52 1.201±0.63 1.935±0.57 1.539±0.00 1.639±0.31 1.052±0.00 2.964±0.41 2.219±0.54 2.230±1.21
ENST00000409301 N/A N/A 0.745±0.00 1.355±0.00 2.823±0.00 1.809±0.00 0.497±0.00 N/A 1.403±0.00 2.484±0.00 0.916±0.00 3.687±0.00 N/A 1.089±0.00
ENST00000446718 N/A 1.235±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000459629 N/A N/A 0.529±0.00 N/A 1.154±0.00 0.869±0.00 0.218±0.00 0.334±0.00 0.777±0.00 0.681±0.00 N/A 1.216±0.00 N/A N/A
ENST00000467779 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485228 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000497020 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000170852 ENST00000304056 4.607±0.00 5.282±0.00 0.601±0.00 8.256±0.64 5.792±0.00 3.033±0.28 3.864±3.19 3.280±2.10 2.521±0.48 6.686±2.00 13.311±0.00 4.629±0.86 4.523±1.98 5.332±1.11
ENST00000423022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000424468 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452926 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000453627 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477129 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000485611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000621876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000229358 ENST00000417811 N/A N/A 1.648±0.00 2.323±0.00 1.897±0.00 N/A N/A N/A N/A 1.273±0.00 N/A N/A N/A 4.383±0.00
ENSG00000231952 ENST00000426647 N/A 0.022±0.00 N/A 0.022±0.00 0.042±0.00 N/A 0.051±0.00 0.075±0.03 N/A 0.037±0.00 N/A 0.058±0.05 0.039±0.00 0.109±0.00
ENSG00000237004 ENST00000441407 0.518±0.00 0.936±0.00 N/A 1.512±0.00 1.318±0.60 1.053±0.00 2.480±1.81 2.286±0.00 N/A 1.630±1.43 1.274±0.00 0.461±0.00 0.622±0.18 1.581±0.00
ENSG00000272905 ENST00000608314 0.150±0.00 0.127±0.00 N/A 0.221±0.15 0.074±0.01 0.148±0.00 0.113±0.00 0.230±0.00 N/A N/A N/A 0.130±0.08 0.084±0.00 0.066±0.01
ENSG00000273014 ENST00000609151 N/A N/A N/A N/A N/A 5.400±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029787 ENSMUST00000031805 4.302±1.24 4.823±1.06 4.378±0.38 9.022±3.83 3.294±0.89 8.980±2.11 0.989±0.14 4.410±0.26 2.054±0.47 5.311±0.86 0.527±0.07 5.104±1.47 4.858±1.41 1.617±0.77
ENSMUST00000176560 N/A N/A N/A N/A N/A 6.343±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177249 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059486 ENSMUST00000114321 1.282±0.42 1.181±0.27 1.468±0.38 1.393±0.06 1.956±0.61 1.303±0.28 0.988±0.21 1.374±0.37 0.994±0.39 2.321±0.49 0.671±0.00 2.379±0.62 1.780±0.19 1.034±0.36
ENSMUST00000114323 5.881±0.65 4.364±0.72 7.094±0.59 8.804±2.06 4.970±1.29 8.106±1.14 3.845±0.23 4.478±0.53 5.022±2.02 9.913±0.65 2.776±0.33 11.013±1.41 10.189±6.62 1.789±0.74
ENSMUST00000124994 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151308 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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