C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AVL9 homolog (S. cerevisiase)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000031805 Avl9-001 ENSMUSG00000029787 10090 + 6:56714927-56761911 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000031805
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000031805 4.302±1.24 4.823±1.06 4.378±0.38 9.022±3.83 3.294±0.89 8.980±2.11 0.989±0.14 4.410±0.26 2.054±0.47 5.311±0.86 0.527±0.07 5.104±1.47 4.858±1.41 1.617±0.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003FD CIL_0003FD_0002 CGP 6:56701063-56761911
CIL_0003FC CIL_0003FC_0002 CGP 6:56714927-56797813

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0016021 IEA integral component of membrane
GO:0016477 ISS cell migration
GO:0055037 ISS recycling endosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000318709 AVL9-003 protein_coding Homo_sapiens 0 2706
ENST00000409301 AVL9-001 protein_coding Homo_sapiens 0 2130
ENST00000446718 AVL9-002 protein_coding Homo_sapiens 0 1727
ENST00000467779 AVL9-007 retained_intron Homo_sapiens 0 407
ENST00000470500 AVL9-008 retained_intron Homo_sapiens 0 424
ENST00000485228 AVL9-005 processed_transcript Homo_sapiens 1e-39 167
ENST00000497020 AVL9-006 retained_intron Homo_sapiens 0 316

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