C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003FL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000063180-ENSDARG00000063177 CGP 7955 22:34737757-35041230
GeneTranscriptPositionBiotype
ENSDARG00000063177 (manf)
mesencephalic astrocyte-derived neurotrophic factor 		ENSDART00000092082 (manf-001) 35034561-35041230 protein_coding
ENSDARG00000063180 (dock3)
dedicator of cytokinesis 3 		ENSDART00000092090 (dock3-201) 34872158-35026007 protein_coding
ENSDART00000137157 (dock3-003) 34737757-34764409 retained_intron
ENSDART00000148499 (dock3-004) 34966082-34969106 retained_intron
ENSDART00000149666 (dock3-001) 34925835-35026071 protein_coding
CIL_0003FL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088538-ENSG00000145050 CGP 9606 3:50675241-51389397
GeneTranscriptPositionBiotype
ENSG00000088538 (DOCK3)
dedicator of cytokinesis 3 		ENST00000266037 (DOCK3-001) 50675241-51384198 protein_coding
ENSG00000145050 (MANF)
mesencephalic astrocyte-derived neurotrophic factor 		ENST00000446668 (MANF-003) 51385357-51389262 nonsense_mediated_decay
ENST00000470900 (MANF-002) 51385409-51389344 processed_transcript
ENST00000482262 (MANF-004) 51387688-51389149 retained_intron
ENST00000528157 (MANF-001) 51385047-51389397 protein_coding
ENSG00000213587 (RP11-646D13.1)
 ENST00000431082 (RP11-646D13.1-001) 50719482-50719951 processed_pseudogene
ENSG00000228337 (RP11-804H8.5)
 ENST00000423991 (RP11-804H8.5-001) 50685551-50685791 processed_pseudogene
ENSG00000235278 (ZNF652P1)
zinc finger protein 652 pseudogene 1 		ENST00000442420 (ZNF652P1-001) 50786674-50788285 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FL_0001ENSDARG00000063177ENSDART00000092082ENSDARG00000063180ENSDART00000092090ENSDART00000137157ENSDART00000148499ENSDART00000149666CIL_0003FL_0002ENSG00000088538ENST00000266037ENSG00000145050ENST00000446668ENST00000470900ENST00000482262ENST00000528157ENSG00000213587ENST00000431082ENSG00000228337ENST00000423991ENSG00000235278ENST00000442420
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003FL_0001ENSDARG00000063177ENSDART00000092082ENSDARG00000063180ENSDART00000092090ENSDART00000137157ENSDART00000149666CIL_0003FL_0002ENSG00000088538ENST00000266037ENSG00000145050ENST00000446668ENST00000470900ENST00000482262ENST00000528157ENSG00000213587ENST00000431082ENSG00000228337ENST00000423991ENSG00000235278ENST00000442420
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000063177 ENSDART00000092082 N/A N/A N/A 6.023±1.73 N/A N/A 12.463±1.74 14.987±2.67 3.850±0.00 N/A 4.766±0.00 N/A N/A N/A
ENSDARG00000063180 ENSDART00000092090 N/A N/A N/A N/A N/A N/A 0.043±0.00 N/A 0.012±0.00 N/A N/A N/A N/A N/A
ENSDART00000137157 N/A N/A N/A 0.666±0.50 N/A N/A 0.134±0.00 0.638±0.24 N/A N/A 0.154±0.00 N/A N/A N/A
ENSDART00000148499 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDART00000149666 N/A N/A N/A 4.988±0.00 N/A N/A 0.218±0.06 0.307±0.15 0.013±0.00 N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088538 ENST00000266037 0.127±0.00 0.173±0.00 0.110±0.00 7.191±0.23 0.193±0.07 0.425±0.27 0.631±0.43 0.134±0.13 0.161±0.16 0.151±0.00 0.437±0.00 0.111±0.08 0.049±0.03 1.239±0.21
ENSG00000145050 ENST00000446668 N/A N/A N/A N/A N/A N/A N/A 1.370±0.00 N/A 9.440±0.00 N/A N/A N/A N/A
ENST00000470900 N/A N/A N/A 0.573±0.00 N/A N/A N/A N/A N/A 0.903±0.00 N/A N/A N/A N/A
ENST00000482262 12.200±0.00 18.212±0.00 N/A 5.966±0.00 11.990±0.00 19.344±14.63 10.553±0.00 46.478±41.78 68.483±0.00 24.429±21.93 3.476±3.20 24.266±2.27 32.254±7.51 28.906±0.02
ENST00000528157 20.560±0.00 22.691±0.00 1.630±0.00 6.078±2.65 13.306±1.78 28.348±22.91 6.204±3.86 38.362±33.57 25.610±21.68 20.933±18.16 2.475±2.12 24.620±17.10 35.926±7.12 34.612±14.96
ENSG00000213587 ENST00000431082 N/A 0.057±0.00 N/A 0.030±0.00 N/A N/A 0.131±0.03 0.084±0.00 N/A 0.098±0.00 0.025±0.00 N/A N/A N/A
ENSG00000228337 ENST00000423991 N/A N/A 4.833±0.00 N/A N/A N/A N/A N/A 0.102±0.00 N/A N/A N/A N/A 0.208±0.00
ENSG00000235278 ENST00000442420 N/A N/A N/A 0.019±0.00 N/A N/A N/A N/A N/A N/A N/A 0.026±0.00 N/A N/A

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