C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000423991 RP11-804H8.5-001 ENSG00000228337 9606 - 3:50685551-50685791 processed_pseudogene

Homo sapiens EnsemblGRCh38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderLiverTestisENST00000423991
Transcript ID Bladder Liver Testis
ENST00000423991 4.833±0.00 0.102±0.00 0.208±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008D8 CIL_0008D8_0001 VISTA 3:50299047-50902727
CIL_0003FL CIL_0003FL_0002 CGP 3:50675241-51389397

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000077747 Gm9234-201 processed_pseudogene Mus_musculus 0 224
ENSMUST00000120318 Gm13493-001 processed_pseudogene Mus_musculus 0 219
ENSMUST00000075723 Gm10123-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000175860 Gm6061-001 processed_pseudogene Mus_musculus 0 213
ENSMUST00000132846 Ppia-001 protein_coding Mus_musculus 0 213
ENSMUST00000119389 Gm14046-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000177265 Gm5777-001 processed_pseudogene Mus_musculus 0 207
ENSMUST00000099961 Gm6043-201 processed_pseudogene Mus_musculus 0 206
ENSMUST00000178933 Gm5558-201 processed_pseudogene Mus_musculus 0 202
ENSMUST00000121819 Gm6044-001 processed_pseudogene Mus_musculus 0 198
ENSMUST00000186816 RP23-215C21.3-001 processed_pseudogene Mus_musculus 0 196
ENSMUST00000137540 Gclm-003 processed_transcript Mus_musculus 0 191
ENSMUST00000090749 Ppia-005 processed_transcript Mus_musculus 0 189
ENSMUST00000075293 E030024N20Rik-001 processed_pseudogene Mus_musculus 5.60519e-45 183
ENSMUST00000155824 Ppia-003 retained_intron Mus_musculus 5.60519e-45 183
ENSMUST00000119751 Gm11469-001 processed_pseudogene Mus_musculus 8.00141e-43 176
ENSMUST00000135789 Ppia-004 retained_intron Mus_musculus 8e-38 159
ENSMUST00000118678 Gm13679-001 processed_pseudogene Mus_musculus 1e-35 152
ENSMUST00000120462 Gm6062-001 processed_pseudogene Mus_musculus 5e-35 150
ENSMUST00000121356 Gm6079-001 processed_pseudogene Mus_musculus 8e-33 143
ENSMUST00000117298 Gm12842-001 processed_pseudogene Mus_musculus 1e-30 135
ENSMUST00000188400 RP23-325F17.1-001 processed_pseudogene Mus_musculus 3e-22 108
ENSMUST00000137829 Ppia-002 retained_intron Mus_musculus 1e-16 90

Loading