C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003GL_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000079241-ENSDARG00000056328 CGP 7955 24:38998045-39072880
GeneTranscriptPositionBiotype
ENSDARG00000056328 (rhot2)
ras homolog gene family, member T2 		ENSDART00000061203 (rhot2-001) 39047112-39072880 protein_coding
ENSDART00000145390 (rhot2-002) 39057250-39061225 retained_intron
ENSDARG00000079241 (wdr90)
WD repeat domain 90 		ENSDART00000109221 (wdr90-001) 38998045-39044924 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003GL_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000161996-ENSG00000140983 CGP 9606 16:649311-674174
GeneTranscriptPositionBiotype
ENSG00000140983 (RHOT2)
ras homolog family member T2 		ENST00000315082 (RHOT2-001) 668086-674174 protein_coding
ENST00000561711 (RHOT2-011) 671917-672817 retained_intron
ENST00000561929 (RHOT2-014) 668209-670940 protein_coding
ENST00000561983 (RHOT2-018) 668105-671199 nonsense_mediated_decay
ENST00000562333 (RHOT2-017) 668187-671993 nonsense_mediated_decay
ENST00000562598 (RHOT2-016) 668182-670538 retained_intron
ENST00000562708 (RHOT2-008) 668112-670525 retained_intron
ENST00000562957 (RHOT2-019) 672792-673537 retained_intron
ENST00000563134 (RHOT2-024) 668106-670993 protein_coding
ENST00000563637 (RHOT2-013) 668151-671934 nonsense_mediated_decay
ENST00000563776 (RHOT2-027) 668105-671162 retained_intron
ENST00000564659 (RHOT2-023) 672668-673972 retained_intron
ENST00000565004 (RHOT2-025) 671082-673057 retained_intron
ENST00000566214 (RHOT2-007) 668151-670773 nonsense_mediated_decay
ENST00000566965 (RHOT2-006) 668560-671785 retained_intron
ENST00000567017 (RHOT2-005) 668162-671933 retained_intron
ENST00000567589 (RHOT2-026) 670528-671312 retained_intron
ENST00000568636 (RHOT2-004) 668658-674125 retained_intron
ENST00000568950 (RHOT2-020) 668178-672297 retained_intron
ENST00000569197 (RHOT2-021) 672749-674165 protein_coding
ENST00000569358 (RHOT2-022) 670455-673059 retained_intron
ENST00000569675 (RHOT2-002) 668135-674174 retained_intron
ENST00000569706 (RHOT2-010) 668132-668881 retained_intron
ENST00000569943 (RHOT2-012) 668353-670959 processed_transcript
ENST00000570092 (RHOT2-009) 668124-670507 retained_intron
ENST00000570280 (RHOT2-015) 668153-671131 nonsense_mediated_decay
ENST00000602564 (RHOT2-028) 668180-673308 retained_intron
ENSG00000161996 (WDR90)
WD repeat domain 90 		ENST00000293879 (WDR90-002) 649417-667830 protein_coding
ENST00000315764 (WDR90-014) 665258-667830 protein_coding
ENST00000420061 (WDR90-005) 649353-656201 retained_intron
ENST00000546516 (WDR90-007) 655058-663433 retained_intron
ENST00000546896 (WDR90-026) 666911-667830 protein_coding
ENST00000546923 (WDR90-021) 661732-662736 retained_intron
ENST00000547407 (WDR90-008) 656275-667829 retained_intron
ENST00000547543 (WDR90-023) 663140-666745 processed_transcript
ENST00000547944 (WDR90-013) 665184-667830 protein_coding
ENST00000548448 (WDR90-024) 665874-666361 retained_intron
ENST00000548603 (WDR90-011) 662275-663437 processed_transcript
ENST00000548844 (WDR90-019) 658560-661075 processed_transcript
ENST00000548859 (WDR90-017) 656433-657357 retained_intron
ENST00000549024 (WDR90-012) 661065-667829 retained_intron
ENST00000549091 (WDR90-001) 649325-667833 protein_coding
ENST00000549648 (WDR90-004) 649353-656201 retained_intron
ENST00000550593 (WDR90-016) 652122-653470 retained_intron
ENST00000550739 (WDR90-020) 659245-660714 protein_coding
ENST00000550902 (WDR90-022) 661588-662224 retained_intron
ENST00000551100 (WDR90-025) 666496-667831 protein_coding
ENST00000552648 (WDR90-018) 655058-657123 processed_transcript
ENST00000552683 (WDR90-010) 657858-663438 retained_intron
ENST00000552728 (WDR90-009) 656421-667830 nonsense_mediated_decay
ENST00000552943 (WDR90-003) 649311-661075 retained_intron
ENST00000553080 (WDR90-015) 664988-667829 retained_intron
ENST00000615333 (WDR90-201) 649353-656201 protein_coding
ENSG00000262528 (LA16c-349E10.1)
 ENST00000573609 (LA16c-349E10.1-001) 654611-656194 antisense

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GL_0001ENSDARG00000056328ENSDART00000061203ENSDART00000145390ENSDARG00000079241ENSDART00000109221CIL_0003GL_0002ENSG00000140983ENST00000315082ENST00000561711ENST00000561929ENST00000561983ENST00000562333ENST00000562598ENST00000562708ENST00000562957ENST00000563134ENST00000563637ENST00000563776ENST00000564659ENST00000565004ENST00000566214ENST00000566965ENST00000567017ENST00000567589ENST00000568636ENST00000568950ENST00000569197ENST00000569358ENST00000569675ENST00000569706ENST00000569943ENST00000570092ENST00000570280ENST00000602564ENSG00000161996ENST00000293879ENST00000315764ENST00000420061ENST00000546516ENST00000546896ENST00000546923ENST00000547407ENST00000547543ENST00000547944ENST00000548448ENST00000548603ENST00000548844ENST00000548859ENST00000549024ENST00000549091ENST00000549648ENST00000550593ENST00000550739ENST00000550902ENST00000551100ENST00000552648ENST00000552683ENST00000552728ENST00000552943ENST00000553080ENST00000615333ENSG00000262528ENST00000573609
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003GL_0001ENSDARG00000056328ENSDART00000061203ENSDARG00000079241ENSDART00000109221CIL_0003GL_0002ENSG00000140983ENST00000315082ENST00000561929ENST00000562333ENST00000562708ENST00000563134ENST00000563776ENST00000564659ENST00000566214ENST00000566965ENST00000567017ENST00000567589ENST00000569197ENST00000569675ENSG00000161996ENST00000293879ENST00000315764ENST00000420061ENST00000546896ENST00000546923ENST00000547407ENST00000547543ENST00000547944ENST00000548603ENST00000549024ENST00000549091ENST00000549648ENST00000551100ENST00000552683ENST00000552728ENST00000552943ENST00000553080ENSG00000262528ENST00000573609
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000056328 ENSDART00000061203 N/A N/A N/A 3.293±2.10 N/A N/A 5.133±0.60 2.577±0.00 0.299±0.00 N/A 1.375±0.00 N/A N/A N/A
ENSDART00000145390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000079241 ENSDART00000109221 N/A N/A N/A 0.608±0.33 N/A N/A 0.891±0.42 1.524±0.00 0.182±0.00 N/A 0.259±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140983 ENST00000315082 6.348±0.00 7.417±0.00 N/A 4.356±3.43 13.489±0.00 2.558±1.94 5.446±5.22 12.644±11.72 10.009±0.00 3.708±3.32 2.073±0.00 17.487±11.32 21.824±3.39 17.689±3.36
ENST00000561711 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000561929 N/A N/A N/A N/A N/A 2.238±0.00 N/A N/A N/A 1.094±0.00 N/A 15.786±0.00 N/A 23.441±0.00
ENST00000561983 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562333 N/A N/A N/A N/A 1.533±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562598 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000562708 14.560±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.039±0.00 N/A N/A N/A
ENST00000562957 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563134 N/A N/A 1.771±0.00 N/A N/A N/A N/A 3.335±0.00 N/A N/A N/A 0.902±0.00 N/A N/A
ENST00000563637 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000563776 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.405±0.00 N/A N/A N/A
ENST00000564659 N/A N/A 1.459±0.00 N/A 14.559±0.00 7.674±0.00 N/A N/A N/A N/A N/A 29.353±0.00 N/A N/A
ENST00000565004 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000566214 N/A N/A N/A N/A N/A N/A 0.826±0.00 N/A N/A 0.676±0.00 N/A N/A N/A N/A
ENST00000566965 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.880±0.00 N/A N/A N/A
ENST00000567017 N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.732±0.00 N/A 0.338±0.00 N/A N/A
ENST00000567589 N/A N/A N/A N/A 2.353±0.00 N/A N/A 2.560±0.00 N/A N/A N/A N/A N/A N/A
ENST00000568636 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568950 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569197 N/A N/A N/A 2.580±0.00 N/A N/A 1.179±0.00 N/A N/A 1.530±0.00 5.330±0.00 N/A N/A 41.035±0.00
ENST00000569358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569675 N/A 7.727±0.00 N/A 0.530±0.00 N/A 0.313±0.00 4.076±0.00 N/A N/A 1.642±1.44 N/A N/A N/A N/A
ENST00000569706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569943 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570092 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570280 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000602564 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000161996 ENST00000293879 0.815±0.00 N/A N/A 0.034±0.00 N/A N/A N/A 0.566±0.00 N/A N/A N/A 4.255±0.00 0.734±0.34 N/A
ENST00000315764 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.894±0.00 N/A N/A N/A N/A
ENST00000420061 N/A N/A 0.324±0.00 N/A N/A 0.296±0.00 N/A N/A 0.554±0.00 N/A N/A N/A N/A N/A
ENST00000546516 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000546896 N/A N/A N/A N/A N/A N/A N/A 2.481±0.00 N/A N/A N/A N/A N/A N/A
ENST00000546923 N/A N/A N/A N/A N/A N/A N/A 1.266±0.00 N/A N/A 3.356±0.00 N/A N/A N/A
ENST00000547407 N/A N/A N/A N/A 1.806±0.00 0.542±0.00 N/A N/A 0.171±0.00 N/A N/A 3.429±0.00 0.663±0.00 4.588±0.00
ENST00000547543 N/A N/A N/A N/A N/A N/A N/A N/A 0.381±0.14 2.436±0.00 N/A N/A N/A N/A
ENST00000547944 N/A N/A 0.419±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548448 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548603 N/A N/A N/A 2.089±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548844 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000548859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000549024 N/A N/A N/A N/A N/A N/A N/A 0.860±0.69 0.284±0.00 N/A N/A N/A 0.714±0.22 N/A
ENST00000549091 N/A N/A N/A N/A N/A 0.307±0.00 N/A N/A N/A 0.562±0.15 0.422±0.00 4.277±0.00 0.235±0.00 8.423±2.84
ENST00000549648 N/A N/A 0.348±0.00 N/A N/A 0.319±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550593 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550739 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000550902 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000551100 N/A N/A N/A 0.648±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552648 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000552683 0.948±0.00 1.614±0.00 0.558±0.00 N/A N/A 0.460±0.00 0.051±0.00 N/A N/A N/A 0.362±0.00 N/A 1.213±0.00 N/A
ENST00000552728 N/A N/A N/A N/A 0.365±0.00 N/A 0.286±0.17 N/A 0.453±0.00 1.632±0.00 N/A N/A 0.473±0.00 N/A
ENST00000552943 N/A N/A 0.363±0.00 N/A N/A 0.103±0.00 N/A 0.233±0.00 0.078±0.00 0.362±0.28 N/A N/A N/A N/A
ENST00000553080 N/A 1.946±0.00 N/A N/A N/A 0.537±0.00 0.530±0.00 1.721±0.00 N/A N/A 0.453±0.00 5.837±0.00 0.892±0.00 N/A
ENST00000615333 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000262528 ENST00000573609 N/A 2.808±0.00 N/A 0.935±0.82 3.524±0.00 0.693±0.35 N/A N/A 0.457±0.00 N/A N/A N/A N/A N/A

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