C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ras homolog family member T2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000315082 RHOT2-001 ENSG00000140983 9606 + 16:668086-674174 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000315082
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000315082 6.348±0.00 7.417±0.00 4.356±3.43 13.489±0.00 2.558±1.94 5.446±5.22 12.644±11.72 10.009±0.00 3.708±3.32 2.073±0.00 17.487±11.32 21.824±3.39 17.689±3.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003GL CIL_0003GL_0002 CGP 16:649311-674174
CIL_0003GN CIL_0003GN_0001 CGP 16:668086-678268

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005509 IEA calcium ion binding
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0005741 IEA mitochondrial outer membrane
GO:0005829 TAS cytosol
GO:0005886 TAS plasma membrane
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 TAS:IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IDA:IEA membrane
GO:0019725 IMP:IEA cellular homeostasis
GO:0031307 IDA integral component of mitochondrial outer membrane
GO:0047497 IMP mitochondrion transport along microtubule
GO:0051056 TAS regulation of small GTPase mediated signal transduction
GO:0070062 IDA extracellular vesicular exosome
GO:0097345 IMP mitochondrial outer membrane permeabilization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000043897 Rhot2-001 protein_coding Mus_musculus 0 1592
ENSMUST00000177347 Rhot2-006 retained_intron Mus_musculus 0 540
ENSMUST00000176591 Rhot2-015 protein_coding Mus_musculus 0 520
ENSMUST00000176709 Rhot2-016 protein_coding Mus_musculus 0 435
ENSMUST00000176247 Rhot2-004 retained_intron Mus_musculus 0 302
ENSMUST00000177470 Rhot2-002 retained_intron Mus_musculus 1e-31 143

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