C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polymerase (RNA) III (DNA directed) polypeptide B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077175 Polr3b-201 ENSMUSG00000034453 10090 + 10:84622437-84727177 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077175
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077175 3.232±1.11 1.660±0.47 3.286±0.60 4.098±1.39 1.909±0.71 1.664±0.58 1.445±0.46 2.034±0.46 2.644±1.18 3.252±0.26 2.353±0.22 3.230±2.24 5.868±2.16 2.427±0.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003I4 CIL_0003I4_0002 CGP 10:84576626-84727177
CIL_00028K CIL_00028K_0002 CGP 10:84622437-84906538

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003899 IEA DNA-directed RNA polymerase activity
GO:0005634 IEA nucleus
GO:0005666 IEA DNA-directed RNA polymerase III complex
GO:0006351 IEA transcription, DNA-templated
GO:0032549 IEA ribonucleoside binding
GO:0032728 ISS positive regulation of interferon-beta production
GO:0045087 IEA innate immune response
GO:0045089 ISS positive regulation of innate immune response
GO:0046872 IEA metal ion binding
GO:0051607 IEA defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000228347 POLR3B-001 protein_coding Homo_sapiens 0 4300
ENST00000539066 POLR3B-003 protein_coding Homo_sapiens 0 4213
ENST00000549569 POLR3B-004 protein_coding Homo_sapiens 0 704

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