C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytoskeleton-associated protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378026 CKAP4-001 ENSG00000136026 9606 - 12:106237877-106247988 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000378026
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000378026 31.078±0.00 26.572±0.00 2.113±0.00 7.090±5.67 11.373±5.71 13.727±10.00 10.508±7.62 17.318±14.64 13.051±7.05 20.935±17.61 7.481±0.00 29.772±21.41 62.340±3.19 17.509±11.98

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00021I CIL_00021I_0001 CGP 12:106063340-106304279
CIL_0005RH CIL_0005RH_0001 CGP 12:106237877-106347015

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0004871 IEA signal transducer activity
GO:0005783 IEA endoplasmic reticulum
GO:0005811 IDA lipid particle
GO:0005856 IEA cytoskeleton
GO:0005886 IEA plasma membrane
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007165 IEA signal transduction
GO:0016020 TAS membrane
GO:0016021 IEA integral component of membrane
GO:0032784 IEA regulation of DNA-templated transcription, elongation
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167671 Ckap4-202 protein_coding Mus_musculus 0 1417
ENSMUST00000053871 Ckap4-201 protein_coding Mus_musculus 0 1417
ENSMUST00000034787 Phip-003 protein_coding Mus_musculus 0.0002 55

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